| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 468,288 | A→T | K79* (AAG→TAG) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 468,288 | 0 | A | T | 98.0% | 414.6 / NA | 149 | K79* (AAG→TAG) | glnK | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (92/54); minor base G (1/2); total (93/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 149 total aligned reads displayed.
CACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAG > CP009273/468143‑468431 | cACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCTTTTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAgg < 2:1185719/149‑1 (MQ=255)cACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAgg > 2:937382/1‑149 (MQ=255) ccGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAggcg < 2:1342667/149‑1 (MQ=255) ccGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAggcg < 2:2636894/149‑1 (MQ=255) ccGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAggcg > 1:1441631/1‑149 (MQ=255) ccGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACAGGGGGGCGGAATACAGAGTAAATTTGCTGCCAAAAGTAAAAATTGATGTGGCGATTGATGATGACCAACTCGATGAACTGCTTGATATGGTAGGTTAggcg > 1:1741428/1‑149 (MQ=255) cGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTAACGGGGGGCGGAATACAGAGCCAAGTTCCTTCCTGAAGTGGAAATGGATATGGCGATTGCGGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAggcgg > 1:671964/1‑149 (MQ=255) tGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGACGAAGTGATCGATATCGTCCGTTAGGCGGCttcc > 1:2465319/1‑147 (MQ=255) tGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATGGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTac > 1:1637806/1‑149 (MQ=255) aaaGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAATGGATCGATATCGTCCGTTAGGCGGCTTaccc > 1:1121416/1‑147 (MQ=255) aaaGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTacac > 2:1884575/1‑149 (MQ=255) aaaGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTacac > 2:190915/1‑149 (MQ=255) aaaGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATAGCGTCAGTTGGGCGGCTTactc > 1:2201036/1‑147 (MQ=255) aaggtgtgagttctCAGAAAGGGCATGCGGAGCTCTACCTGCGTGCGGAATACTGCGTCAATTTCCTGCCAAAATTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTTCTCTATATTTTTAGTTAGCCGGCGTACAcc < 1:2045161/136‑1 (MQ=255) aGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCttgcttcg < 1:1654890/149‑7 (MQ=255) aGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCg > 2:1399441/1‑149 (MQ=255) gTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGa > 2:132767/1‑149 (MQ=255) gTTTCGGGCGCCAGAAAGGGCATGCCGAGCCGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGa < 2:436838/149‑1 (MQ=255) tttCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGaa < 1:1270400/149‑1 (MQ=255) cGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACGGCGCCATTTGCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGaaaaa < 2:1166898/149‑1 (MQ=255) cGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTAATCAATGTTATTAGTTAGGCGGCTTACACCGGAAAAATTgg < 2:1966645/149‑1 (MQ=255) tCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAACAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATCGGCg > 1:101568/1‑149 (MQ=255) tCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTTGGCGGCTTACACCGGAAAAATTGGCg > 1:2471932/1‑149 (MQ=255) tCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCg > 2:1591259/1‑149 (MQ=255) aGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTGCCGGCCAAAAGTAAAAAGTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATAACGTCTGTTAGGCGGCTTAAAAAAAAAAAATTGGCGAc < 1:1233611/149‑1 (MQ=255) gAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAATATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATAGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACg > 2:1738665/1‑149 (MQ=255) gAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACg > 2:2014657/1‑149 (MQ=255) gggCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAACAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACCCCGGAAAAATTGGCGACGGCaa > 2:413263/1‑149 (MQ=255) ggCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCaaa > 2:1048550/1‑149 (MQ=255) ggCAAGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCaaa < 2:2223145/149‑1 (MQ=255) cATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGACGGTTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGACTTACACCGGAAAAATTGGCAACGGCAAAAt > 1:1063889/1‑149 (MQ=255) gCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCtt > 1:1109932/1‑149 (MQ=255) aGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTtcgtc < 2:640198/149‑1 (MQ=255) cTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGc > 1:350981/1‑149 (MQ=255) tgaaaccgggggCGGAAGACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAGGTGGCGATCGCTGATGACCCAGTGGATGAAGTGATCGATATCGTCAGTTAGGCAGCTTACACCGGAAATATTGGCGACGGCAAAATCTTCGTCGCt < 2:536798/142‑1 (MQ=255) tACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACGCCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGa > 1:562927/1‑149 (MQ=255) tACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGa > 1:1400395/1‑149 (MQ=255) cGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGCTGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAAtt > 1:1618440/1‑149 (MQ=255) ggggggCGGGAGACAGCTGCACTTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGGTGAGGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTg < 1:1722933/149‑1 (MQ=255) gggCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCGGAATTGCaa > 1:1944182/1‑149 (MQ=255) ggCGGAATACAGCGTCAAGTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGCCGAAGGCAAAATCTTCCTCGCCGCATTGCAAc > 1:1723131/1‑149 (MQ=255) cGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAAcgc > 1:2316486/1‑149 (MQ=255) aCAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGCCGGCAAAATCTTCGTCGCTGAATTGCAAAGCGTcttg > 1:2328598/1‑146 (MQ=255) cGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGCCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgta > 1:709253/1‑149 (MQ=255) gTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCACCGCGTCattggtat > 2:239858/1‑149 (MQ=255) gTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgtat > 2:2380244/1‑149 (MQ=255) tCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgtatt < 2:945081/149‑1 (MQ=255) gatttttCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGAGGACCAACTCGAGGAAGTGATCGATATCGTCAGCTACGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCattcgtattc < 1:2591230/146‑1 (MQ=255) cAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCGTACACAGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCACCGCGTCattcgtatac > 2:377139/1‑147 (MQ=255) aTTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGCCattcgtgttcgt > 1:1194296/1‑149 (MQ=255) tgacAAAAGTGAAAATTGTTGTGGCGCTGGCTGATGGCCAACTCGATGAAGTGATCGCAGCCGTCAGTTAGGCGGCCTCAACCGGTAAAATTGGCGAGGGCAAAATCTTCGACGCTTAATTGCAACGCGTCTTTCGTATTCGTACCGGc < 1:177888/146‑1 (MQ=255) tGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGc > 2:2098214/1‑149 (MQ=255) tGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGCCATTCGTATTCGTACCGGc > 1:693907/1‑149 (MQ=255) gCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGGCATTCGTATTCGTACCGGCg > 1:148205/1‑149 (MQ=255) ccAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGa > 2:1775474/1‑149 (MQ=255) aGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTCGGCGGCTTACACCGGAACAATCGGCGACGGCGAAATCTGCGTCTCTGAATTGCAACGCGACATTCGTATTCGTACCGGCGAAGCcg > 1:1638599/1‑149 (MQ=255) gTAAAAATTGATGTGGCGATTGCTGATGACCAACGCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCcga < 2:2266880/149‑1 (MQ=255) gcaaaaTTGTTTGGGCGATTGCTGATTACACACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAATTCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCcgac < 1:2400938/147‑1 (MQ=255) aaaaaTTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGGCGCTGAATTGAAACGCGTCATTCGTATTCGTACCGGCGAAGCcgacg > 1:1797967/1‑149 (MQ=255) gaTTCATTTGTCGACTGCGGCTGACCAACTCGAGGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAAGTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAg < 1:1352730/148‑1 (MQ=255) ttGATCTGGCGATCGCGGATGCCCAACTCGATGAAGTGATCGCTCTCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAgcg < 2:208863/149‑1 (MQ=255) tgtgGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGgcgc < 2:2310069/149‑1 (MQ=255) tgGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTg > 2:1086972/1‑149 (MQ=255) tgGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTg > 2:1668869/1‑149 (MQ=255) gCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTa > 1:1809048/1‑149 (MQ=255) gCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGGTAGAAGTCATACACCGTAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGAGGAAGCGGCGCTGTa > 1:443782/1‑149 (MQ=255) gATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAAt < 1:638160/149‑1 (MQ=255) gATTGCCGATGACCAACTCGATGAAGTGATCGATAGCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTGCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAAt < 2:630389/149‑1 (MQ=255) tgcgtatgaCCAACCCGAGGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAAGTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCCGTAAtctc < 1:982397/144‑1 (MQ=255) tGCTGAGGATCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCCTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAAtctc < 1:573755/149‑1 (MQ=255) gCTGATCACCCACTCGATGAAGGGAGCGATATCGGCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGACGCGGCGCTGTAATctct < 1:1642007/149‑1 (MQ=255) tgatgaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAGATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCGACGCGTCATGCGTATTCGTACCGGCAAAGCCGACTAAGGGGCGCTGTagtagcggg > 1:2069668/1‑141 (MQ=255) tgatgaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg > 2:1018690/1‑149 (MQ=255) tgatgaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCCTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg < 1:132767/149‑1 (MQ=255) taaggcccAACTGGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGGCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTgg < 1:747639/143‑1 (MQ=255) atgaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGca > 2:2597644/1‑149 (MQ=255) ggaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAATTCTTCGGCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGcac < 1:1618016/148‑1 (MQ=255) gaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAGCGCGTCGTTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGcaca > 2:738640/1‑149 (MQ=255) gaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGGGGTAATCCCTGCcaca > 1:1078742/1‑149 (MQ=255) gaCCAACTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTCACACCGGAAAAATTGGCGACGGCAAAATCATCGTCGCTGAATTGCAACGCGTAATTCGTATTCGTACCGGAGAAGCCGACGAAGCGGCGCGGTAACCTCTGGcaca > 1:544305/1‑149 (MQ=255) ccATCTCGCTGAGGGGATGGGTATCGTCAGTTGGGCGGCTTACACCGGAAAAATTGGCGACGGCAAATTCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGTAGCCGACGAAGCGGCGCTGTAATCTCTGGcacaca < 1:1175120/149‑1 (MQ=255) cAACTCGATGAAGTGATCGATATCGTCAGCTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAg > 2:1617919/1‑149 (MQ=255) cTCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCaa > 2:210697/1‑149 (MQ=255) tCGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAAc > 1:1482789/1‑149 (MQ=255) cGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGCCGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa > 1:516424/1‑149 (MQ=255) cGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACa < 2:562927/149‑1 (MQ=255) cGATGAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAAGTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTATCGGCGAAGCCGACTAAGCGGCGCTGTAATCTCTGGCACACAGCAACa < 2:1716240/149‑1 (MQ=255) gAAGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGaa < 2:2104314/149‑1 (MQ=255) gAAGTGATCGATAACGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGaa < 2:2328598/149‑1 (MQ=255) aatgtaTCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCCACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAAc < 2:791570/144‑1 (MQ=255) aaGTGATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAAGGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGGAATCTCTGGCACACGGGCACAGGAAc > 1:209594/1‑149 (MQ=255) aaGTGATCGATATCGTCAGTTAGGCGGCTTACACAGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAAc > 1:2444244/1‑149 (MQ=255) gATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCTACAGGAACGaaa > 1:1925297/1‑149 (MQ=255) gATCGATATCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaa < 2:1637806/149‑1 (MQ=255) aTCGATATCGTCAGTTAGGCGCCTTACACCGGAAAAATTGGCGCCGGCAAAATCTTCGTCGCTGAATTGCACCGCGTACTTCGTAGTCGTGCCGGCCAAGCCGCCAAAGCGGCGCTGTAAGCCCCGGCCCACCCCCTCAGGACCGaaac > 1:81484/1‑148 (MQ=255) tCGATATGCTCGGTGAGGCGGCTTACACCGGAAAAATTGGCAACGGCAAAATCTTCGTCGCTGAATTGCAACGCTTCATTCGTATTCGTACCGTCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGaaaaa < 2:1741428/149‑1 (MQ=255) atatCGTCAGTTAGGCGGCTTACACCGTAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGa < 2:1388667/149‑1 (MQ=255) tatCGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGaa < 2:126194/149‑1 (MQ=255) cGTCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGGAGAt > 2:400177/1‑149 (MQ=255) tCAGTTAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAg > 1:2648338/1‑149 (MQ=255) | CACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAG > CP009273/468143‑468431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |