| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3263118 = | NA (NA) | 3 (0.070) +TAAACCACGTAG |
3/272 | 6.5 | NA | noncoding (38/98 nt) | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127814 | NA (NA) | noncoding (98/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTGAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAA > CP009273/4127679‑4127957 | cTGAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGTTGCGGAGTGAACGCCTTCTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCCGCAGGCAGTTTTGCGGTCa > 2:452129/1‑149 (MQ=21)cTGAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGCACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATTAGGCAAGTTTGCGTTCa < 2:544656/149‑1 (MQ=255) tGAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTTCAGAGATTGCGTAGGCCTGATAAGCGTAGCGGATCAGGCAATTTTACGTTCaa > 2:143720/1‑149 (MQ=255) gAACCACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCaaa < 2:669637/149‑1 (MQ=255) caacGGGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTc < 1:118236/149‑1 (MQ=255) aaacGTGGGAGTTTCAGATTACTGGCCCAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATCCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTc < 1:97926/148‑1 (MQ=255) cacGTGGGAGTTTCAGATTACTGGCACGGAGTTCCGGATGCGGAGTGAACGCGTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGATATTGCGTAGGCCTGATAAGCGTATCGCATCAGGCAATTTTGCGTTCAAACTcc < 2:406378/148‑1 (MQ=21) cGTGGGGGTTTCAGATTTCTGGCAAAGAGGGCCGTATTCGCAGGCAACGCCTTATGCGTGCTACAAAAGCACGCAAATTCAATGCATTGCAGGGATTTCGTAGGCCCGATAAGCGTAGCGCATCACGCAATTTTGCGTTCACCCTCCCg < 2:268521/149‑1 (MQ=12) tGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCCTCAGGCAACTTTGCGCTCAAACGCCCGGa > 1:304510/1‑149 (MQ=255) gggAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc < 1:288088/149‑1 (MQ=255) aGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAGGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGGCAAg > 1:381041/1‑149 (MQ=255) ttaGATTACTGGCACAGAGTGCCGGATGCGGAGTGACCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATCGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCgg < 1:114332/147‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCgg > 1:25440/1‑149 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCgg > 1:726141/1‑149 (MQ=255) aGACTACTGGCACAGAGCGCCGGATCCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATCGCAGAGATTCCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGa < 2:187472/149‑1 (MQ=21) gATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCggcttgtccgggag < 2:595932/149‑13 (MQ=255) tccggcactctgTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGCTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTg > 1:490489/12‑149 (MQ=18) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTg < 1:110222/149‑1 (MQ=255) gCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTATGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACACGCCGGGAGTTTGGAGt > 2:715758/1‑149 (MQ=255) cacaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTa < 1:435181/149‑1 (MQ=255) acaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:41636/149‑1 (MQ=255) acaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:1975/149‑1 (MQ=255) gagCGCCGGATGCGGAGTGAACGCCTTACCTGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCCTCAGGCAATTTTGCGTTCAAACCCCCGGACAAGCCGGGAGTTTGGAGTAGGtt < 2:402092/149‑1 (MQ=21) cGGAGGCGTAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATACAGTGCAGAGATTGCGTAGGCCTGAGAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCTGGAGTTGGGAGTAGGTTATTccc < 2:609237/149‑1 (MQ=21) gATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGGGTTTGGAGTAGGTTATTCCCAc > 1:220390/1‑149 (MQ=255) tGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGGTTGGAGTAGGTTATTCCCACTCTTGccgc > 2:564062/1‑146 (MQ=255) cTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCt > 2:47931/1‑149 (MQ=255) ttATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCGTCGGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTTCCAATCTTGCAGGaaagtctg > 1:183856/1‑144 (MQ=25) cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTg > 1:276253/1‑149 (MQ=255) aCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGt > 1:141723/1‑149 (MQ=255) aCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGCTTGGAGTAGGGTATTACCACTNTTGNGNGAAACGCTGACCGTACTggg > 1:523948/1‑148 (MQ=25) aaGCACGCAAATTCAATATATTGCAGAGAGTGCGTAGCCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCGGGGACAGGGCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGc < 2:119164/149‑1 (MQ=37) cGCAAATTCAATATATTCCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACca < 2:231380/149‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCagag < 1:333154/149‑1 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAgc > 2:328716/1‑149 (MQ=255) atTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTaa < 1:95973/149‑1 (MQ=255) caggaaTTGCGTAGGCCTGATAAGCGTACCGCAGCAGGGAATTTTGCGTTCAAAATCCCGGACAAGGCGGGAGTTTGTAGTAGGTTATTCCCTCTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCt < 2:252489/144‑1 (MQ=255) cAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGGTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAACGCGGCGACAACCt > 1:270299/1‑149 (MQ=39) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTg > 1:473410/1‑149 (MQ=255) agaTTTCGTAGGCCTGATAAGCGTAGCGCAGCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACCCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGAt < 2:266467/149‑1 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATc < 2:250574/149‑1 (MQ=255) aTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCt > 1:149884/1‑149 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTg < 1:526534/149‑1 (MQ=255) gcggcggCCTGATAAGCGGAGCGCATCGGGCCATTTTGCGGTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGCCCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGc < 2:441725/144‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCgc > 1:187515/1‑148 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACAACCGGACAAGCCGGGCGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAAGGCGGCCTACACCTGCTCTGGCGTCGcgcc > 2:288447/1‑149 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACCCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCa < 1:65542/149‑1 (MQ=255) caaGCGGAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCa < 2:734207/148‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGCCCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAg < 2:116574/149‑1 (MQ=255) gtaGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGCAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGGGaa > 2:377337/3‑149 (MQ=255) | CTGAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAA > CP009273/4127679‑4127957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |