New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	454243 =	6 (0.330)	10 (0.570)	8/264	NT	63.0%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	CP009273	603467 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

CAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTA  >  CP009273/454097‑454382                                                                                                                                                   |                                                                                                                                            agagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccatttatcgtggacataattcatcggcacgttaaatcatatcttgcgtaataccacaacccttaagttagcgcttatggg                                                                                                                                           >  1:226974‑M1/147‑149 (MQ=255)     ccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatg                                                                                                                                             <  2:241440‑M1/1‑1 (MQ=255)      cccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg                                                                                                                                            >  2:182992‑M1/142‑143 (MQ=255)      cccggcattacgggccggagtatccagtgcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg                                                                                                                                            >  2:52730‑M1/142‑143 (MQ=255)                   aTTTATGGCAAGCAGGAAGCGCAACAGGCAACTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCATAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCa                                                                                                                               <  2:225708/143‑1 (MQ=255)                          tatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACAGACGTAc                                                                                                                  <  1:96759‑M1/28‑1 (MQ=255)                          tatccagttcttcgggcttaccaacatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc                                                                                                                  >  1:295935‑M1/122‑149 (MQ=255)                                gttcttcgggcttaccaatatgggccagaattgcttaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc                                                                                                                  >  2:87465‑M1/116‑143 (MQ=255)                                gttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaaccctaaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc                                                                                                                  >  2:87506‑M1/116‑143 (MQ=255)                                cGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCACTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCAAgtaggcgcttactta                                                                                                                  >  2:82228‑M1/1‑128 (MQ=255)                                       gggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTaa                                                                                                           <  2:244041‑M1/35‑1 (MQ=255)                                               caatctgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAg                                                                                             >  1:219706‑M1/101‑149 (MQ=255)                                                        aataatTAACCATTCCCATACAAATAGTCAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACcgtcgt                                                                                    >  1:183355/1‑149 (MQ=255)                                                                 ccATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTCTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCgtgcc                                                                                 >  2:187908/1‑141 (MQ=255)                                                                   aTTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt                                                                               <  2:104736‑M1/143‑51 (MQ=255)                                                                               gtAGTTAACCAAAAAGGGGGGATTTTATCTCCGCGGTAATGTTTCCGCTATCCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACCGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa                                                             <  1:291326/148‑1 (MQ=255)                                                                                   ttAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGAGGGAAAAATCCCataagcgctaacttaagggttgaacaatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcg                                                         >  1:21211‑M1/1‑77 (MQ=255)                                                                                     caCCGAAATGGGGGGATTTTATCTCCCCTTTCAGTTTTCCTCTCTTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa                                                             <  2:192151/142‑1 (MQ=255)                                                                                     aaCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcg                                                       <  1:324443‑M1/149‑75 (MQ=255)                                                                                      aattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAACAGATGGCGTGAAGCACAGTCGTGTCCTCTGATTACCTGGCGGAAAt                                                            <  2:207531‑M1/82‑1 (MQ=255)                                                                                          aaaaGGTGGGTTTTTATCGTCCCTTTAATTTTTCGTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgc                                                        <  2:110553‑M1/143‑74 (MQ=255)                                                                                              ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCACCATATACTGACGTACATGTTAATAGATGGCGGGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTaa                                                    <  2:185423‑M1/90‑1 (MQ=255)                                                                                               gcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATTTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagagag                                             <  1:96218‑M1/97‑1 (MQ=255)                                                                                                                       ttttCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggata                     <  1:59295‑M1/149‑109 (MQ=255)                                                                                                                                          ttGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTa  >  1:49023/1‑149 (MQ=255)                                                                                                                                            cgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATccc      <  2:112656‑M1/136‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            CAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTATGAATCCTGAGCGTTCTGAACGCATTGAAATCCCCGTA  >  CP009273/454097‑454382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.