New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2060065	28 (0.430)	5 (0.080)	5/282	9.0	15.6%	noncoding (770/1195 nt)	IS5	repeat region
	?	CP009273	= 2060178	NA (NA)					noncoding (657/1195 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGATGCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGCTCTT  >  CP009273/2059922‑2060211                                                                                                                                                |                                                                                                                                                   atgatgCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCAcc                                                                                                                                                    >  2:167303/1‑144 (MQ=32)  tgatgCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGCTCAGCCAGTCCACATCCCCCt                                                                                                                                                   >  2:178947/1‑144 (MQ=17)   gatgCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATCCGATGTTGATGGCCGTTTTGTTCTTCCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCa                                                                                                                                             <  1:1074300/149‑1 (MQ=17)    atgCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCCAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCGGCCAGTCCACCTCCACCTCg                                                                                                                                                 >  2:127778/1‑144 (MQ=12)      gCGAAAGTGGTGCTCCACCTTGGCCCGGATGGTGGCTTTCATGTATTCGATGTTGATGCCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTCCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCGCCTCGGc                                                                                                                                               <  2:185818/144‑1 (MQ=11)       cggaaTGGGGGCTCCACCTTGGCCCGGATGCGGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGcc                                                                                                                                              <  2:596476/141‑1 (MQ=12)         aaaTGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTGGGCGACCAGCCAGTCCACATCCACCTCGGCCAGatcct                                                                                                                                       >  1:762277/1‑149 (MQ=12)                  cTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTGTGTTCTTGCGTGGATGCGGATTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCCCCTcgcg                                                                                                                                   >  2:910338/1‑144 (MQ=255)                   tCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTgg                                                                                                                             <  1:66282/149‑1 (MQ=32)                    ccACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGgc                                                                                                                            >  1:395789/1‑149 (MQ=32)                                                                                                                        ggCGATCAGCCAGTCCCCATCCCCCCCGGCCAGTCCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTa                        <  1:19092/149‑1 (MQ=11)                                                                                                                         gCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTAATTGCTGTAGATGAGATTACCCGGCTGATTGAGGTCATGCTCGTTGGCCGCggtgggcaccag                       >  1:261691/1‑142 (MQ=1)                                                                                                                             tCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGGCATGCTCGTTGGCCGCGGTGGTGACTa                        >  2:885890/1‑144 (MQ=14)                                                                                                                              catccAGCCCACATCCATCTCGGCCAGCTCCTCGCGCTGTGGCGTTCTTTGGTAGCCGGCATCGGCTGAGACAAATTGCCCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCtgt                  <  1:588219/146‑1 (MQ=11)                                                                                                                               aGCCAGTCCACATCCACCTCGGCCAGCTCCCCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCCCGTTGGCCGCGGTGGTGACTAgg                      >  2:67890/1‑144 (MQ=17)                                                                                                                                gccatcccACACCCCCCTCGGCCAGCGCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGc                     <  2:155201/138‑1 (MQ=11)                                                                                                                                gCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTgg                >  1:771997/1‑149 (MQ=32)                                                                                                                                 ccAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGCGGTCATGCTCGTTGGCCGCGGTGGGGAGTAGGCt                    >  2:917601/1‑144 (MQ=12)                                                                                                                                   aGTCCCCATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCGCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCtgt                  <  2:603807/144‑1 (MQ=17)                                                                                                                                   aGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCtgt                  <  2:65638/144‑1 (MQ=32)                                                                                                                                   aGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCtgt                  <  2:65847/144‑1 (MQ=32)                                                                                                                                   aGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAGGCAGCAGATTACCCAGCTGATTCCCAGACTGCGTTTTGGCCGCGGTGGTGACTAGGCtgt                  <  2:725343/144‑1 (MQ=11)                                                                                                                                     tCCACATCCACCTCGGCCAGCTCCTCGCGATGTGGCGCCCCTGGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAg           <  1:26289/149‑1 (MQ=17)                                                                                                                                     accatcttcACCCCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTgg                <  2:967372/136‑1 (MQ=255)                                                                                                                                        acaTCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCCGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGGTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGcc        >  1:631262/1‑149 (MQ=17)                                                                                                                                         caTCCACCTCGGCCAGCCCCGCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCGCCATGCAGCAGATTACCCAGCTGCTTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCa            <  2:6016/144‑1 (MQ=255)                                                                                                                                            ccACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGctc    >  1:658197/1‑149 (MQ=35)                                                                                                                                            ccACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGAATCGGCTGAGACAAATTGCTCCTCCCCATGGAGCCGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGccc    >  1:325730/1‑147 (MQ=255)                                                                                                                                              aCCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGCCCGCTCtt  >  1:97412/1‑149 (MQ=21)                                                                                                                                                |                                                                                                                                                   ATGATGCGAAATGGGTGCTCCACCTTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGCTCTT  >  CP009273/2059922‑2060211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.