| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1972748 = | 1 (0.020) | 58 (1.350) | 44/290 | 0.1 | 98.3% | intergenic (‑294/‑486) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
Only 100 of 105 total aligned reads displayed.
TCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCA > CP009273/1972601‑1972894 | gggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 2:296665‑M1/148‑149 (MQ=255)gggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 2:644197‑M1/2‑1 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 2:52122‑M1/147‑149 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcacaccttccTTa > 2:528190‑M1/147‑149 (MQ=255) ggacaagaaaatctcttttcgagtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagttgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 2:516795‑M1/147‑149 (MQ=255) caagaaaatctcttttctggtctgacggcgcttactgctgaagtcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACa > 2:240796‑M1/144‑149 (MQ=255) aagaaactctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:380669‑M1/143‑144 (MQ=255) aCAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCCCACCAAACCCTCAATTTCtt > 1:609848/1‑144 (MQ=255) agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggggaaggtaagttgatgactcatgatgaactctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:126601‑M1/142‑144 (MQ=255) agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtacgttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:176756‑M1/3‑1 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtcagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatcccatatcagggacttgttcgccccttccttcg < 1:185265‑M1/4‑3 (MQ=255) aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagctgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATaaa > 2:588201‑M1/140‑149 (MQ=255) aaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctgccTTAACATAAAt > 2:507165‑M1/139‑149 (MQ=255) aatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttacTTAACAt < 1:45226‑M1/7‑1 (MQ=255) aGAAATGGGTCTTTCCACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgc > 2:649423‑M2/1‑140 (MQ=255) tgttgtcgggttttactgcggttactgctgaattcactgtcggggaagggaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgagctcatatcagggacttgttcgcaccttccataacgctgta > 1:171055‑M1/134‑138 (MQ=255) tcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAACTGtata < 2:589961‑M1/16‑1 (MQ=255) ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTGTAAGTc < 2:207294‑M1/20‑1 (MQ=255) tggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATCAGTCATa < 2:348378‑M1/23‑1 (MQ=255) ggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaggtacttgttcgcaccttccTTAACATAAATGTATAAGTCATAc > 2:533863‑M1/126‑149 (MQ=255) cacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgg > 1:155319‑M2/1‑125 (MQ=255) cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaatt > 2:334896‑M2/1‑123 (MQ=255) tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttc > 2:175593‑M2/1‑119 (MQ=255) gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTgg < 2:274690‑M1/35‑1 (MQ=255) tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc < 2:549300‑M2/149‑33 (MQ=255) tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattc > 1:344173‑M2/1‑117 (MQ=255) tAAGATTTTTCCTAAATCGACGCAACTGTACACGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATAATGCGTGATGCAGATCACAGCAAACACTCAAGTACTTACggaagtggcgattaagcggagaaactcttctc < 2:534987‑M2/149‑33 (MQ=255) ttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACttttgttt < 1:534194‑M1/32‑1 (MQ=255) aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggcaattcttctcg < 2:569271‑M2/149‑34 (MQ=255) ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggcaga < 2:40701‑M2/149‑39 (MQ=255) tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcgg > 1:36377‑M2/1‑110 (MQ=255) attcactgtcggcgaaggtcagttgattactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgtttgcaccttccTTAACATAACGGTATAAGTCATACTTGTGTTTTGGGTGTATTTCAAt > 2:149353‑M1/103‑149 (MQ=255) tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt < 2:128033‑M2/149‑45 (MQ=255) aTCGACGCACCGGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACGCTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactca > 1:132787‑M2/1‑102 (MQ=255) tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc < 1:115633‑M1/48‑1 (MQ=255) tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa > 2:207923‑M1/97‑149 (MQ=255) tgtcggccaatgtaagttggtggcgcatgatgagccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa > 2:319795‑M1/97‑149 (MQ=255) cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 2:239953‑M2/149‑50 (MQ=255) tcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTATGTTTTGGGTGTATTTCAATCTGGTaaa < 2:738390‑M1/55‑1 (MQ=255) ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTCTTGTTTTGGGTGTATTTCAATCTGtt < 1:282133‑M1/52‑1 (MQ=255) aCTCGTCACTACACGCACATACAACGGAGGGGGGGTGCGATTTTCAATAATGCGTGATGCAGGTCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctaggctgactcaggcattgcatttct < 1:309020‑M2/144‑57 (MQ=255) aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcagg < 2:224926‑M2/149‑62 (MQ=255) cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 2:706561‑M2/1‑87 (MQ=255) gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat > 1:399916‑M2/1‑84 (MQ=255) gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGGGATGCAGATCACACAAAACACGCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctggcttagtcatctcctttcctcaggtttg < 2:627727‑M2/149‑66 (MQ=255) tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga > 2:76333‑M2/1‑83 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacaagagctcgtatcagggagttgttcgcaccttccTTAACATAAATGTATAAGTCATATTTGTTGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 1:446736‑M1/79‑144 (MQ=255) tACAAGCACATAACACGGAGGGGGGTTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg > 1:70311‑M2/1‑79 (MQ=255) gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag < 2:660877‑M1/74‑1 (MQ=255) actcatgatgaaccctgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg > 1:57867‑M1/75‑144 (MQ=255) cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgcg < 1:608697‑M2/144‑68 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAATAAGTTTTTcgctacgcta > 1:312149‑M1/72‑144 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 1:504031‑M1/72‑144 (MQ=255) catgaggaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 2:113133‑M1/72‑149 (MQ=255) aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct > 2:638738‑M2/1‑70 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa > 2:429180‑M1/66‑149 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGCTAGCAAGCAAAAAt < 2:347351‑M1/85‑1 (MQ=255) gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:650910‑M2/1‑62 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa < 1:316502‑M1/87‑1 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTGAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 1:68835‑M2/144‑87 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 2:443165‑M1/96‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 2:150613‑M1/96‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg < 1:663487‑M1/92‑1 (MQ=255) ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAAggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:298756‑M2/1‑56 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga > 2:721215‑M2/1‑54 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc < 1:101201‑M2/144‑91 (MQ=255) ctccagatgacaaacatgatctcatatcagtgacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:21085‑M1/50‑144 (MQ=255) ccagatgacaaacatgttcgcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAACCTGTAAAAGAGGTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 2:512906‑M1/48‑149 (MQ=255) ccagatgacaaacatgatcctatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa > 2:5353‑M1/48‑149 (MQ=255) aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcag < 2:306695‑M2/149‑101 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACAGAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg > 1:277531‑M1/44‑144 (MQ=255) ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatc < 1:236798‑M2/144‑99 (MQ=255) aataatGCCGCATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc > 1:186238‑M2/1‑43 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcgcggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcctattttttctcccgtaaatgccttgaatcagcctattt > 2:480634‑M2/1‑42 (MQ=255) taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattta > 2:602339‑M2/1‑41 (MQ=255) aacattttcgcatatcagggacttgttcgcaccttccTCAACTTAAAGGTATAAGTCATACTTTTTTTTTTTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg > 1:344264‑M1/38‑144 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt < 2:487143‑M1/113‑1 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaactgccttgaatcagccta < 1:299926‑M2/144‑105 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt > 1:216965‑M2/1‑38 (MQ=255) ttacttaagatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg > 2:234607‑M1/34‑149 (MQ=255) tctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg < 1:494384‑M1/114‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGAGATGTTGcgcacgg < 2:318249‑M1/121‑3 (MQ=255) ccagacaccacaaaacactcCATTACTTAAggaaggtgcgaataagcggggaaatgcttctcggctgactcagtcatttcatttcttcatgttttagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttctt > 2:344585‑M2/9‑30 (MQ=255) agggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt > 2:660564‑M1/22‑149 (MQ=255) gggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa < 2:239274‑M1/129‑1 (MQ=255) ggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTAGGCTAGCAAGCAAAAATGAAACAGGAATAATCAAAATGGGATGTTGCGCACAGTCaa < 1:411912‑M1/125‑1 (MQ=255) cttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt < 1:676818‑M1/128‑1 (MQ=255) ttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGAGCTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa < 2:731013‑M1/134‑1 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaag < 2:295095‑M2/149‑131 (MQ=255) tgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa > 1:41318‑M1/15‑144 (MQ=255) ttcgcaccttccTTAACATAAATGTATAGCGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTACAAAGTTTTTCGCTACACTAGCAAGCAAAAATGAAACAGGAATACTCGAAATGGGATGTTGCGCCCAGTTAAAAAAACt < 1:77550‑M1/132‑1 (MQ=255) acccTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcg > 2:543727‑M2/1‑16 (MQ=255) gcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa < 2:154903‑M1/140‑1 (MQ=255) tCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttat < 2:552022‑M2/149‑138 (MQ=255) tCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggc < 1:668936‑M2/144‑133 (MQ=255) cttccTTAACATAAATGTAGAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa > 2:83574‑M1/6‑149 (MQ=255) ttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa > 1:188208‑M1/5‑144 (MQ=255) aCTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccag < 2:50875‑M2/149‑144 (MQ=255) cTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata < 1:616777‑M1/143‑1 (MQ=255) ttAAggaacgaccgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc < 1:339572‑M2/144‑141 (MQ=255) | TCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCA > CP009273/1972601‑1972894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |