New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	454243 =	3 (0.070)	43 (1.030)	35/290	0.2	93.6%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	CP009273	603467 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

CAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/454391‑454243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTA  >  CP009273/603467‑603613                                                                                                                                                                                                                                                                                                           CAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC                                                                                                                                                     >  1:432007/1‑149  atCGGCAAGACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCA                                                                                                                                                    >  2:182755/3‑149  AGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCA                                                                                                                                                    <  2:227390/149‑1    CGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATA                                                                                                                                                  >  1:87848/1‑149     GGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTACCCATAA                                                                                                                                                 >  1:358290/1‑149             GGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACCTGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAAC                                                                                                                                         >  1:262329/1‑149             GGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGCACGTCAGTATATGGGGCTGTTTCCCCATAAGCGCTAAC                                                                                                                                         >  2:69391/1‑149                  TTTCAATGCGTTCAGAACGCTCAAGATTAATAGATCTCTCTCTTAGTTTAATTACCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAG                                                                                                                                    >  1:381755/1‑149                   TTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTT‑ATGTAATGCTGTTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGG                                                                                                                                   >  1:506131/1‑149                      AATGCGTTCAGAACGGTCAGGATTCCGAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTT                                                                                                                                <  1:115420/149‑1                      AATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTT                                                                                                                                >  1:103879/1‑149                       ATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTG                                                                                                                               >  2:66568/1‑149                       ATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTG                                                                                                                               >  2:462466/1‑149                          CGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGG                                                                                                                            <  1:690914/149‑1                          CGTTCAGAACGCTCAGGAGTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGG                                                                                                                            <  2:256926/149‑1                               AGAACGCTCAGGATTCATAGAGCTCTCTCCTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTTTAGGGGTATGTTTCCCCATAAGCTCTAACTTAAGGGTTGTGGTATTA                                                                                                                       <  2:457492/149‑1                                    GCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCT                                                                                                                  <  1:628982/149‑1                                                   AGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT                                                                                                   <  2:327198/149‑1                                                                  TAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCGT‑CTATTAACAAGCACATCTGTATATGGGGATGTTTCCCCATGAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC                                                                                    >  1:441176/1‑149                                                                  TAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGGTGTTTCCCCATAAGCGCTAACTTAAGGGTCGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC                                                                                    <  2:579141/149‑1                                                                  TAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCAAAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGACGCATTACTC                                                                                    >  2:75967/1‑149                                                                         CGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAT                                                                             <  2:559973/149‑1                                                                              GGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTCCGTCAGAATATGGGGATGTTTCCCCGTAAGCGCTAACTTAAGGGTTGTGGTATTCCGCCTAATATGATTTAACGTGCCGATGAATTACTCTCATGTTAACTG                                                                        >  1:478496/1‑149                                                                               GTAGTCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGG                                                                       <  2:100065/149‑1                                                                                             CGACTGTGCTTAACGCCAT‑TGATTAACATGTGCGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                                         <  2:622831/149‑1                                                                                                      TTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGCTGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCCATTCCGGCCCATATTcg                                                >  1:618615/1‑147                                                                                                        CACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTA                                              <  2:374738/149‑1                                                                                                         ACGCCAT‑CTATTAACATGGACGTCAGTATATGTTGAGGTTTCCCATTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAA                                             <  1:92807/149‑1                                                                                                         ACGCCAG‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAA                                             <  2:692927/149‑1                                                                                                               T‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGGCAGCAATTCTGTCCCATATTGGTGAGCCCGA                                       >  2:335404/1‑149                                                                                                                  TATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGTTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAG                                     <  1:489291/149‑1                                                                                                                        CATGTACGTCAGTATATGGGGATGTTTCCCCATCAGCGCTACCTAAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCCGGCCCATATTGGTAAGCCCGAAGAACTGG                               <  1:488587/149‑1                                                                                                                        CATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG                               <  1:462466/149‑1                                                                                                                        CATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT‑CCGATGAATTACTCTCACGATAACTTGTCAGCAATTCTGGCCCACATCGCTAAGCCAGAAGAACTGGA                              >  2:429151/1‑149                                                                                                                        CATGGACGTCAGTATATAGACATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG                               <  1:66568/149‑1                                                                                                                            TACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTTAGGGTTGTGGTATTACGCCTGATATGATTTAACGTCCCGATGAATTACTCTCACGATAACTAGTCAGCAATTCTGGCCCCTATTGGTAAGCCCGAAGCACTGGAgca                           >  2:76801/1‑146                                                                                                                              CGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTCCTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTT                         <  2:262329/149‑1                                                                                                                              CGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTT                         >  1:1614/1‑149                                                                                                                               GTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTGAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC                        <  1:69391/149‑1                                                                                                                                 CAGTATTTGGGGATGTTTCCCCATGAGCGCTAGCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATATTTCGG                      <  2:486660/149‑1                                                                                                                                          GGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATG             >  1:655308/1‑149                                                                                                                                              TGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGG         >  1:351942/1‑149                                                                                                                                                TTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGG       <  1:196093/149‑1                                                                                                                                                 TTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCCCGGAATGCCGGGGC      >  2:205300/1‑149                                                                                                                                                     CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTCATGCCGGGGCTCTA  >  2:45445/1‑149                                                                                                                                                     CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTA  >  1:369888/1‑149                                                                                                                                                                                                                                                                                                           CAGCGGCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCAT‑CTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/454391‑454243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTA  >  CP009273/603467‑603613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.