New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 4511181 = | 58 (1.360) | 4 (0.100) | 4/284 | 5.5 | 6.9% | coding (657/1350 nt) | yjhF | putative transporter |
? | CP009273 | 4511198 = | 52 (1.270) | coding (640/1350 nt) | yjhF | putative transporter | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
AGTATCACGTTGTAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCT > CP009273/4511038‑4511325 | aGTATCACGTTGTAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATcggcg < 2:325473/149‑1 (MQ=255) gTATCTCGTTGTAAATTCAGCCTGACTCCGCGGCACTTTTGGCATTAGTCATCTGGATGATGGTGACAACCGCCATCAGGCTCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATcggcgg < 1:591306/149‑1 (MQ=255) tATCACGTTGTAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCggg > 2:685601/1‑149 (MQ=255) cGTTGTAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGGGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTcgcg > 1:135437/1‑149 (MQ=255) gTTGTAAAATAAGCCTGAGTCCGCGGCACTTTTGGCATGAGTCATCGGGATGATGGCGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGACAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATGGGCGGGTcgacc > 2:447121/1‑146 (MQ=255) gTAAAATAAGCCTGAATCCACGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCga > 1:504725/1‑149 (MQ=255) tAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgag > 1:406618/1‑149 (MQ=255) tAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCAGGATCATTGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgag > 2:177239/1‑149 (MQ=255) aaaTAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgagag < 1:11638/149‑1 (MQ=255) aaTAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCGGAATCGGCGGGTCGCGCCgagaga > 1:275800/1‑149 (MQ=255) ccTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGCTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGCGGatat > 1:88429/1‑149 (MQ=255) cTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTGCGCATTCGCTGAGTCGGCGGGTCGCGCCGAGGGAGGCtata > 1:471760/1‑149 (MQ=255) tCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTccc < 2:252684/149‑1 (MQ=255) tCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTccc < 1:206135/149‑1 (MQ=255) gcgGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCCGCATTGCCGTGAGGAAACTGATCCCCAAGACTGGCATTTGGATTTCGCTGACTCGGCCGGGTGCACCCTGAGAGACAATTGTCCCctc > 2:478642/1‑149 (MQ=255) cgGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTGTATTCCCctct > 2:624957/1‑149 (MQ=255) cACTTTTGGCAGGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCtttt < 2:375179/149‑1 (MQ=255) ttGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTaaa < 1:69213/149‑1 (MQ=255) ttGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGCCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTaaa < 1:46398/149‑1 (MQ=255) atgatgGTGACAACCGCCATCAGGACCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATgcg < 1:557250/149‑1 (MQ=255) tatgGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCt < 2:587710/148‑1 (MQ=255) atgGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCCCTTTTTTAAAGGCGCCCGGAAAAAGGCGCTg > 2:468721/1‑149 (MQ=255) gACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGa < 1:685601/149‑1 (MQ=255) gACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGCCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTTATTGCTTCCAGAACACTGCGCCCGCAGa > 2:513332/1‑149 (MQ=255) cAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAt < 2:363896/149‑1 (MQ=255) aaCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGGGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAtt > 1:253516/1‑149 (MQ=255) aaCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAtt > 2:509004/1‑149 (MQ=255) aCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATCATGCGCCGGCAGAGttt > 2:244335/1‑149 (MQ=255) cGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTAt < 1:177239/149‑1 (MQ=255) gCCATCAGGATCACCCGCAGCATTGCCGTAACAAAACTCATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGCGCCGCGCCAAGAAACCCTATATTCCCCCCTTTTTTAAAGGCGTCCGGAATAATGCCCTGGCAGAATTTAtt < 2:441986/149‑1 (MQ=255) ccATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTc < 2:504725/149‑1 (MQ=255) cAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATa < 2:436958/149‑1 (MQ=255) ggATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCATCCGGAATAACGCGCTGGCAGAATTTATTCAATAcc > 1:449818/1‑149 (MQ=255) cagcaTTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCaaa < 1:149935/149‑1 (MQ=255) gcaTTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGTTTTATTTCCTTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGa < 1:187716/149‑1 (MQ=255) gCCGGGAGAAAACTGACCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATaaa < 2:79924/149‑1 (MQ=255) cGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAggaacacgg > 2:428675/1‑141 (MQ=255) tGAGACAACGGACCCCAGAGCCTGGCATTTCGCTTTCGCTGCATCGGCGGGTCGCGCGGCGAGAAGCTAGATTCCCCTTTGTTTTAAAGACGTCCGGAATAATGCGCTGGCAGAAGTTATTCAATACCGGGCCGCAAAGAATAAAGGtt < 2:88429/149‑1 (MQ=255) tGAGAAAACTGGTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGtt < 2:471760/149‑1 (MQ=255) aaaaCTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGaa > 1:266674/1‑149 (MQ=255) aaaaCTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGAGACGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTAGTCAATACCGGGCCGCCAAGCATAAAGGGTGGaa > 2:115599/1‑149 (MQ=255) gATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCCGGTCGCGCCGAGAGAGGCTATATAGTTTTATGGTTCAAAGGAGTACGGAAGAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGa < 1:509004/149‑1 (MQ=255) aTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCCATACCGGGCCGCAAGGGCTAAAGGGTGGAATGGCGAc > 2:633792/1‑149 (MQ=255) aTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGaaggacgga > 1:508025/1‑142 (MQ=255) ccAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATGTTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCGGCCAAt > 1:24647/1‑149 (MQ=255) ccAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAAt < 1:31393/149‑1 (MQ=255) acaaattctttcATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAAt < 2:660961/138‑1 (MQ=255) cAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAACGGTCGGAATGCCCACCAtc > 2:680041/1‑148 (MQ=255) cAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGCCCGCAAAGAATACAGGTTGGAATGCGGAGAATg > 2:357910/1‑149 (MQ=255) ccTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGGGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATAcc < 2:253516/149‑1 (MQ=255) ccTGGCATTTCGCTTTCGCCGAATCGGCGGGTCGCGCGGAGAGAGGCTATATTCCCCTCTTTTTTAACGGCGTCCGGAACAATGCGCTTGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGCCAATGATAcc < 2:266082/149‑1 (MQ=255) cTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGCGAGAGGCTATATTCCCCTCTTTTTTAACGGCGTCCGGAATAATGCGCCGGCAGAATTTATTCAAAACCGGGACGAAAACAATACAGGTTGGAATGCTGACAATGATACCg < 2:63590/149‑1 (MQ=255) tGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGGTACCgg > 1:100840/1‑148 (MQ=255) tcgctttcgctGTATCGGCGGGTCGCGCCGAGATAGGCTATATTCCCCTCTTTTCTGAAGGCGGCCGGAATAATGCGCTGGCAGAATTGATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAg < 2:419894/149‑1 (MQ=255) tttcgctGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTCTTCAATACCGGGCCGCAAAGAATAAAGATAGGAATGGCGACAAGGATTACGAATATCAGTAcc > 2:395984/1‑149 (MQ=255) gtcgcgGAAACGGCGGGTCGCCCCGAGAGAGCCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAACGCGCTGGCATAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCa < 1:633792/148‑1 (MQ=255) gctGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATc < 1:62915/149‑1 (MQ=255) tGAATGGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCt < 2:462175/149‑1 (MQ=255) | AGTATCACGTTGTAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCT > CP009273/4511038‑4511325 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |