| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1391495 | NA (NA) | 118 (0.980) | 82/294 | 0.3 | 97.5% | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | CP009273 | = 1972751 | 3 (0.030) | intergenic (‑297/‑483) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein | |||||
Only 100 of 237 total aligned reads displayed.
CTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC > CP009273/1972603‑1972899 | gacaagataatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccccgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTaa > 1:1045216‑M1/146‑149 (MQ=255) ttACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCATATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCACTTACTTAAg < 2:971568‑M2/149‑2 (MQ=255) ttACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAg > 2:1869231‑M2/1‑148 (MQ=255) acaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAc < 2:1607817‑M1/5‑1 (MQ=255) agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATa < 1:1680948‑M1/8‑1 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtgagttgatgactcatgatgaaccctgttctatggctccagatggcaaacatgatctcatatccgggacttgttagcgccttccTTAACATaa < 2:539648‑M1/9‑1 (MQ=255) aaaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAAggaag < 2:786369‑M2/149‑6 (MQ=255) aaaTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAACGCGTGGTGCTGATCACACAAAACACTCAATTACTTAAggaag < 1:367355‑M2/149‑6 (MQ=255) ctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGtat < 2:1419294‑M1/15‑1 (MQ=255) aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa > 2:1545796‑M2/1‑137 (MQ=255) cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATaa > 1:744106‑M1/133‑149 (MQ=255) ttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAg < 2:1335494‑M1/18‑1 (MQ=255) tttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGt < 1:1039166‑M1/19‑1 (MQ=255) tCTTTACACTTATCTAAGATTTTTCCTAAATCTACGCAACTGTACTCGTCACTACACGCACATACAACGTCTGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAtgaaggtgctaataagcg < 2:1024932‑M2/149‑19 (MQ=255) tgagggcgctaacgggcgaagtcacggccggggaaggtaagttgatgactcaggatgaaccctgttctatggctccagaggacaaacaggatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACtttt > 2:1700879‑M1/122‑149 (MQ=255) ggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACttttgttt > 1:571805‑M1/118‑149 (MQ=255) cgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACttttgttttg > 2:241555‑M1/116‑149 (MQ=255) tAAGATCTTGCCTGAATCGACGCAACTGTACTCGTCACTACAGGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc > 1:541334‑M2/1‑117 (MQ=255) aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcg < 2:40516‑M2/149‑34 (MQ=255) aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcgg < 2:67929‑M2/149‑35 (MQ=255) actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccGTAACATAAATGTATAAGTCATACTTTTGTTTTGGgtgt < 1:1336409‑M1/39‑1 (MQ=255) tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgac > 2:1778516‑M2/1‑110 (MQ=255) tgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTc < 1:1301072‑M1/44‑1 (MQ=255) gaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGtatttta < 2:1041004‑M1/45‑3 (MQ=255) attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 2:1439404‑M1/103‑149 (MQ=255) ttcactgtcggcgaagataagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTTGATTTCAATc < 2:1060487‑M1/48‑1 (MQ=255) taacgcgacgcAACTGTACTCCTACCTACACGCACATCCAACGGGGGCGGGCGGCGGTTTGTAATAATGCGTGATGCAGATCACACAAAACACGCACTTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 2:317642‑M2/6‑105 (MQ=255) aaaTCGACGCAACTTCACTCGTGACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:1950848‑M2/1‑104 (MQ=255) cactgacggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACATTTGTTTTGGGTGTATTTCAATCTg < 2:1377431‑M1/50‑1 (MQ=255) gACGCAACCGTACTCGGCACCAAACGCACACACAACGTAGTGGTGCTTCGATTTTCAATCATGCGTGATGCATATCACACAATACACTCAATTACTGAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc > 2:481147‑M2/1‑99 (MQ=255) aCCCAACTGTATTAGTCACTACACGCACATACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 1:236143‑M2/1‑98 (MQ=255) cggcgaaggtaagttgatgtctcatgatgaaccctgttccatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa > 1:1181515‑M1/94‑149 (MQ=255) gCAACTGGACTCGTCACTACACGCACATACAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttcgcggctgactcagtcatttcatt > 1:445602‑M2/1‑96 (MQ=255) gCAACGGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:1570721‑M2/1‑96 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑g < 1:1925459‑M1/58‑1 (MQ=255) ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaggaacttgttcgcaccttacTTAACATAAATGTATAAGACATAATATTGTTCTGGGTGTATTTACATCTGTGAAAAAAGtttt < 2:573793‑M1/63‑1 (MQ=255) tACTCGTCACTACACGCACATACAAGGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgcctcagtcatttcatttcttcct < 1:988768‑M2/149‑61 (MQ=255) tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat < 2:744279‑M2/149‑61 (MQ=255) gtaagttgatgactcatgatgacccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTc > 1:1611500‑M1/86‑149 (MQ=255) gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTc > 1:1737656‑M1/86‑149 (MQ=255) tCGTCATGACAAGCACAGACGACGGAGGGGGGCTGCGTTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt > 2:1809614‑M2/1‑86 (MQ=255) tCGTCACTACACGACCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt < 2:1211699‑M2/149‑64 (MQ=255) agttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcggaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTcgct < 1:1478481‑M1/67‑1 (MQ=255) cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt < 1:109703‑M2/149‑65 (MQ=255) gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAtgtaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg > 1:57814‑M2/1‑84 (MQ=255) tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga > 1:1116969‑M2/1‑83 (MQ=255) aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc > 1:303446‑M2/1‑81 (MQ=255) tgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTcgctacgcta > 2:864333‑M1/77‑149 (MQ=255) tgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTcgctacgcta > 1:143919‑M1/77‑149 (MQ=255) cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgggcc < 2:259321‑M2/149‑70 (MQ=255) actcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTagc > 2:114127‑M1/75‑149 (MQ=255) acacGAACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga > 1:264276‑M2/1‑78 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTagcaa < 2:1859459‑M1/77‑1 (MQ=255) taaagatgactcctgtgctatggctccagatgacaaacaggatctcatctcagtgactggttcgcaccctccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTagcaa > 1:1724644‑M1/73‑149 (MQ=255) acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:1601434‑M2/149‑74 (MQ=255) acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATACAGATCACACAAAACACTCAATTACTTAAggagggtgcgaataagcggggaaattcttctcggctgactcagtcatgtcatttcttcatgtttgagccgatt < 1:601932‑M2/149‑74 (MQ=255) gCACATACAACGGAGGGGGGCTTCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttttagccgatttt < 1:414520‑M2/149‑76 (MQ=255) caccTACCACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaatttttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt > 2:1170532‑M2/1‑73 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCaaaaa < 2:443340‑M1/84‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGa > 1:827071‑M1/63‑149 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagcgacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGa > 2:704168‑M1/63‑149 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAACTGaa < 1:1644455‑M1/88‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGaaa > 1:970291‑M1/61‑149 (MQ=255) ttctatggctccagatgacaaacatgatcttatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:1567163‑M1/58‑149 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:1518166‑M2/1‑59 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:1119336‑M2/1‑59 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaacttcttctcggctgacccagtcattccatttcttcatgcatgagccgcttttttctcccgtaaatgcc < 2:958073‑M2/149‑92 (MQ=255) ggaCTTCGATTTTCAATAATGCGCGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcct > 2:8913‑M2/1‑57 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat > 2:1315181‑M1/54‑149 (MQ=255) gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgact < 2:1118725‑M2/149‑98 (MQ=255) cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatc < 1:888412‑M2/149‑99 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa < 1:1900583‑M1/104‑1 (MQ=255) ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc < 2:81699‑M2/149‑102 (MQ=255) ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct < 1:1771326‑M2/149‑104 (MQ=255) gacaaacaggtgctcatatcagggacttgttcgatccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTTTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg > 2:1361849‑M1/42‑149 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt < 1:1012580‑M1/110‑1 (MQ=255) aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgcttttttctcccgtaaatgccttgaatcagcctatt < 2:33719‑M2/149‑107 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt > 2:1291438‑M1/37‑149 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg > 2:758794‑M1/36‑149 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTGGACATCCAAAAGGAAACAGGAATAATCGAAATGGGATGTTgcgc < 1:1335227‑M1/117‑1 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTGGGGTGTAGTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAACGGGATGTTgcgc < 2:553259‑M1/117‑1 (MQ=255) tGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtt < 1:452066‑M2/149‑116 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttt > 2:1569697‑M2/1‑33 (MQ=255) gCAGATCACACAAAACACCCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttctt > 2:1634557‑M2/1‑30 (MQ=255) cagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa < 2:1753530‑M1/127‑1 (MQ=255) ggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGACACAGGAATAATCGAAATGGGATGTTGCGCACCGACAACATaa < 2:1531589‑M1/130‑1 (MQ=255) acttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt > 2:1934654‑M1/18‑149 (MQ=255) ttgtccgcaccttccTTAACCTAAATGTATAAGTCATACTTTTGCTTTGGGTGTATTTCCATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa > 1:76905‑M1/16‑149 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaag > 1:1191823‑M2/1‑19 (MQ=255) aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaag < 2:1359591‑M2/149‑131 (MQ=255) aaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg < 1:907007‑M2/149‑132 (MQ=255) cgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa < 1:196757‑M1/139‑1 (MQ=255) tCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttat > 1:984057‑M2/1‑12 (MQ=255) tccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc > 2:1680948‑M1/4‑149 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt < 1:339179‑M2/149‑147 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt < 1:1156476‑M2/149‑147 (MQ=255) tAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt > 2:103002/1‑149 (MQ=255) aaggaaggtgcgaatatgcggggaaattcatctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcattatccccagtttt < 1:1235746‑M2/149‑148 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttcccccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt > 1:554871‑M2/1‑2 (MQ=255) aCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc > 1:1267590/1‑149 (MQ=255) | CTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA‑GTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC > CP009273/1972603‑1972899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |