New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 222382NA (NA)8 (0.140) 6/282 5.1 NA noncoding (137/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?CP009273 = 222386 NA (NA)noncoding (141/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

ATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGT  >  CP009273/222364‑222531
                      |                                                                                                                                                 
aTGGGGACACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGc                     <  1:347839/149‑1 (MQ=17)
    ggAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCag                 >  1:908670/1‑149 (MQ=32)
        aCCCAGTGTGGTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGcc             <  2:846992/149‑1 (MQ=17)
           cAGTGTGTTTCGACACACTATCATTAACTGAGTCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCGGAGGAAAAGAAATCTACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGa          <  2:225563/149‑1 (MQ=12)
                 gtTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGTAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgt    <  2:534432/149‑1 (MQ=17)
                   ttCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGCAACATCTAAGTACCCCGAGGTCAACCACTCTGCCGAGAGTCCCCCCGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgt  <  2:439123/149‑1 (MQ=11)
                   ttCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAgtgt  <  2:709842/149‑1 (MQ=32)
                      |                                                                                                                                                 
ATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGTGT  >  CP009273/222364‑222531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.