| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 31 (0.530) | 29/296 | 1.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 57 (0.970) | 45/296 | 0.3 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
GCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC > CP009273/2400110‑2400404 | gCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCACATGAGTTGCACt > 2:138411/1‑149 (MQ=255) cTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAg > 1:47521‑M2/1‑148 (MQ=255) atatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggt < 1:831287‑M2/149‑8 (MQ=255) tatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtg < 1:115903‑M2/149‑9 (MQ=255) atatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgc < 1:588672‑M2/149‑10 (MQ=255) ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattcccccgcctattcgcaccttccCTAAAAAAGCGCCTCACCtt > 2:509757‑M2/130‑149 (MQ=255) ttaaagggcgaagaatcggtttaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatttgcaccttccCTAAAAAAGCGACTCACAtt < 2:270850‑M2/20‑1 (MQ=255) cACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaag > 2:121520‑M2/1‑133 (MQ=255) aCTTACCGGCGGCGTATACTGAGCTGGTTAATGCTGGGCACACACAAACAAGCAATCCCATTTGTAATGTGCCCCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagt > 2:738716‑M2/1‑132 (MQ=255) aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGtt < 2:371686‑M2/23‑1 (MQ=255) aatggcgaagaaacggtctaaataggctgattcaaggcatctacgggagaaaaaatcggctcaaacatgcagaaatgaaattactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGtt < 1:85598‑M2/23‑1 (MQ=255) tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctga > 1:113146‑M2/1‑126 (MQ=255) cggagaaacggtctaaataggctgattcaaggcatatacgggagaaaaaatcggctcaagcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGtt < 2:121547‑M2/28‑1 (MQ=255) gcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatga > 1:203316‑M2/1‑121 (MQ=255) tCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgaga > 1:597788‑M2/1‑119 (MQ=255) tCATACTGAGCTGGTCAATGCTGTGAACACACAAACAAGCAATTCCATTGGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAAGGGATATGAGTTGCACTACggaaggtgcgaaccagtacctgataagaga < 2:111497‑M2/149‑31 (MQ=255) tCAAACTGTGCTGGTTAATGCTGTGCACACACAAACAAGCAAATCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGTAACCCGAACAAAAGAAAAAATGCATATGAGGTGCACTAAggaaggtgcgaacaagtccctgatatgaga > 2:484218‑M2/1‑119 (MQ=255) acggactaaataggctgattcaaggcattaacaaaagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGc < 2:367497‑M2/35‑1 (MQ=255) aCTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGCTGCACTAAggaaggtgcgaacaagtccctgatatgagaacat < 2:309048‑M2/149‑35 (MQ=255) cTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagctcgtg < 1:6552‑M2/149‑36 (MQ=255) aGCTGGTTGATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATAAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt > 2:839458‑M2/1‑111 (MQ=255) aGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAACGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt > 1:864365‑M2/1‑111 (MQ=255) cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgaggtcatgtttgt < 1:728209‑M2/149‑41 (MQ=255) cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggggcgaacaagtccctgatatgagatcatgtttgg < 2:448477‑M2/149‑41 (MQ=255) aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:259996‑M2/104‑149 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtgagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCCCATTGTTCCGTTATAATGCCTGAGGTAGAtcc > 2:55546‑M2/102‑148 (MQ=255) tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 1:875791‑M2/149‑49 (MQ=255) tGCTGGTCAGAGACAAACCAGGAATTCCATTTGTAACGTGCCGCCCTGGCAGTTTCATCCGGACCACGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:660424‑M2/1‑101 (MQ=255) gCCGTGCACACACAAACAAGCAATTCCATTTGTAATGGCCCTCCCTGGCAGATTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTACACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag > 1:63400‑M2/1‑100 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATCTGCCTCCCTGGCAGTTTCATCCGGACCCCGGCCGAAAGTAAAAATGCATATGCGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcgtctggagc < 2:58053‑M2/149‑51 (MQ=255) gcgcaCCCACAACCAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGGTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca > 2:352759‑M2/3‑97 (MQ=255) ggcACACACAAAAAAGTAATGCCATTTGGAATGTGGCTCCCTGGGAGTTTAAGCCGGAACCAGGACGAGAGTAAAAATGCAGAGGAGTTGCACTAAggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccat > 1:393564‑M2/2‑96 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc > 2:678587‑M2/91‑149 (MQ=255) cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 1:42430‑M2/1‑94 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 2:737408‑M2/61‑1 (MQ=255) tttacgggagaaaaaataggctaaaacacgaaaaaatgaaatgactgaatcagccgagaagaatttccccgctgattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCACTATAAATCCATAAGTAGCTCACAGAATATATCTTc > 2:434855‑M2/88‑149 (MQ=255) cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAGATGCAGCTGAGTTGCCCTAAggaaggtgcgaacaagtccctgatatgagatgatgtttgtcagctggagccagagagca < 1:75865‑M2/149‑60 (MQ=255) gacgggagaaaaaatcggctcaaacaggaagagatgaaatgactgggtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTAGAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 2:5342‑M2/64‑1 (MQ=255) acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 2:588672‑M2/1‑89 (MQ=255) acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:309539‑M2/85‑149 (MQ=255) acaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:732772‑M2/1‑85 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATc < 2:915492‑M2/69‑1 (MQ=255) caaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTAAAAATGCATATAAGTTGCACTAAggaaggtgagaacaagtcacagatatgagatcaagtttgtcaccgggagcaatagaacagggtac < 2:428071‑M2/149‑66 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa > 1:867148‑M2/78‑149 (MQ=255) ttCCAGGTGTAATGTGCCTCCCTGGCAGTTTGATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgctaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 1:642764‑M2/1‑77 (MQ=255) ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagaccctgatatgagatcatgtttgtcatctggagccgtagaacagggttcatcatgagt < 1:604495‑M2/149‑75 (MQ=255) cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc < 1:286061‑M2/149‑76 (MQ=255) gcactgtgcctcCCTGCCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcacctggagccatagaacagggttcatcatgagtcatcaa > 1:310813‑M2/5‑69 (MQ=255) tAATGTGCCCCCCTGGCAGTTTCATCCGGAACCAGGCCGACCGTATCAACTCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtccatcatgagtcatcaac > 1:73639‑M2/1‑68 (MQ=255) tAACGTGCCTCCCTGGCAGTTTCACCAGACACCCGGACGAAAGTAAACATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac > 1:343825‑M2/1‑68 (MQ=255) aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact > 1:210363‑M2/1‑67 (MQ=255) aTGTGCCTCCCTGGCAGTTGCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 2:115903‑M2/1‑66 (MQ=255) gtgCTTCCCAGGCAGTTTCATCCGGAACCCGGGCGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac > 1:738607‑M2/1‑64 (MQ=255) atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAANTAGATCACAGAATATNTCTTCNGGGATCGNATATCTATTAAGTtactn > 1:823460‑M2/61‑148 (MQ=255) cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcgtctggagccatagaacagggtccatcatgagtcatcaacttaccttc > 1:532833‑M2/1‑60 (MQ=255) cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttagcttc < 2:697806‑M2/149‑90 (MQ=255) tCCCTGGCAGTTTCATCCGGAACCGGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 2:886982‑M2/1‑59 (MQ=255) tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 2:888049‑M2/1‑59 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt > 2:204875‑M2/49‑149 (MQ=255) atgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAGGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAtt < 1:896768‑M2/102‑1 (MQ=255) aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt > 1:689591‑M2/1‑51 (MQ=255) ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 2:831287‑M2/1‑48 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCCCATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt > 2:391173‑M2/45‑149 (MQ=255) tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgagaacaagtccctgataggagatcatgtttgtcatctggagccataggaccgggttcatactaagtcatcaacttaccttcgccgacagtgcat < 1:51553‑M2/149‑103 (MQ=255) aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtggattc < 1:236638‑M2/149‑105 (MQ=255) gtcagccgagaagaatttccccgcttattcgtaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAATTAGGGAACTGATTATGTCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACAt < 2:439184‑M2/110‑1 (MQ=255) ccGGAGCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 1:545327‑M2/1‑43 (MQ=255) ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 1:99265‑M2/1‑43 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc > 1:518142‑M2/1‑42 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc > 1:45443‑M2/1‑42 (MQ=255) cagccgtgaagaatttccccgattatccgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc < 1:258755‑M2/112‑1 (MQ=255) gagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtg < 2:259996‑M2/117‑1 (MQ=255) gagaagaatttccccacttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGGTCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtg > 2:228019‑M2/33‑149 (MQ=255) cgaagaattacaccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTGCCGTTATAAGGCCTGAAGTAGATCACAGAATCTATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTACTATTTATGACATGCGCgtgt < 1:321134‑M2/118‑1 (MQ=255) tttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAAGGCGTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtata > 2:379447‑M2/25‑149 (MQ=255) ttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaa < 2:376098‑M2/126‑1 (MQ=255) caccggttactcgcaacattcCTATACAAACGACTCTCCTTGTTTCGTTAAAATGCCAGAAGTAGATCACATAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 1:435228‑M2/128‑1 (MQ=255) ccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTCTGACATGCGCGTGTTTGTAtaaatgt > 1:347570‑M2/20‑149 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtgaatgtaaat > 1:81464‑M2/16‑149 (MQ=255) tcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa < 1:883565‑M2/138‑1 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaacgagagtttc < 1:526393‑M2/149‑141 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc > 2:875791‑M2/1‑9 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 2:281286‑M2/149‑141 (MQ=255) gCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgacttcagcagtaagcgccgtcggaccagaaacggggttttctt < 2:406148‑M2/149‑143 (MQ=255) ccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGtt < 1:391173‑M2/147‑1 (MQ=255) cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg < 2:227945‑M2/149‑144 (MQ=255) cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgacgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg < 2:526330‑M2/149‑144 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt > 1:835199‑M2/1‑5 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacagtcgccgacagtgaattcagcagtaaacgccgtcagaccagaaaagagattttcttgt < 2:880107‑M2/149‑145 (MQ=255) | GCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC > CP009273/2400110‑2400404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |