| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,370,282 | C→T | W166* (TGG→TGA) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,370,282 | 0 | C | T | 97.3% | 223.8 / NA | 76 | W166* (TGG→TGA) | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (32/41); minor base G (1/1); total (34/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370138‑3370423 | agactacttCCGGCCGAGATGCATTTCACGTTCTGCTTCAGTTTAAGAAGCAAGGAACGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCGCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcaca < 1:563935/141‑1 (MQ=255) gATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAcag > 1:372759/1‑149 (MQ=255) aTTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGGCGACGTCAcagc > 2:844155/1‑149 (MQ=255) aTTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAcagc < 2:904131/149‑1 (MQ=255) aCTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGACGCAAGGAAAGCGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCg < 1:797763/149‑1 (MQ=255) cTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCgg < 1:360903/149‑1 (MQ=255) tCCGGCCCATACGCATTTCACCTCCCGCACCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGa < 2:49393/149‑1 (MQ=255) tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGa < 1:315178/149‑1 (MQ=255) tCCGGCACAGAGGCATTTCACGTTCTGCTTAAGTTATAGAAGCAAGGAAAGAGTAACGCTCAAAGACGCGGGTGCTAAAGCCATTCAGCTCTTTCGCACCCGGGCCGCTGCACAAGATGCCCAGTTGAGGAAGACGGCACGACAGCgca > 2:422059/1‑147 (MQ=255) ccAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGa > 1:881018/1‑149 (MQ=255) cAGACGCATTCCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGAt < 1:209124/149‑1 (MQ=255) aCGTTCTGCTTCAGTTAAAGGAGCATGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCTGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCa < 1:579516/149‑1 (MQ=255) gTTCTGCTTCAGTTAAAGAAGCGAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATTGCCTTTCAGCTCTTTCGCACCGGGGCCGCTGCACTCGATGCCCAGTTGCGGCAGACGTCACGGCAGCGGAGCAATATAGCAATCGACCAgg < 1:604163/149‑1 (MQ=255) gCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGCCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGaa < 2:765415/149‑1 (MQ=255) gCTTCAGTTAAAGAAGCAAGCAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGaa < 1:842815/149‑1 (MQ=255) cTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAAc > 1:821638/1‑149 (MQ=255) ttCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACt > 1:170479/1‑149 (MQ=255) ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg > 1:889477/1‑149 (MQ=255) ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg > 2:642267/1‑149 (MQ=255) ttAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGAGCCGCTGAACCCGATCCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCCAGACAGCAATCGACCAGGCCGAACCCATCg > 2:270062/1‑149 (MQ=255) tcaaaGAAGAAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATAGAGCCTGTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCg < 1:69306/147‑1 (MQ=255) cagaagCAATGAAAGAGCCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGCTGCTGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTc < 1:422059/148‑1 (MQ=255) cAAGGACAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 2:114718/1‑149 (MQ=255) cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGGTGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCACGATAGCAATCGGCCGGGCTGAACTCATCGCTCAGGAAg > 1:45393/1‑149 (MQ=255) cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 2:114740/1‑149 (MQ=255) cAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCACTAACTCAGCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAg > 1:658722/1‑149 (MQ=255) ggAAAGAGGCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTAc < 1:266312/149‑1 (MQ=255) gAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCACTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCCGGCTGAACTCATCGCTCAGGAAGTACg > 2:342237/1‑149 (MQ=255) aaaGCGGCACGCTCAAAGACGCGGGTCATATATCCTTTCAGCTCTTTCGCAGCCTGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACTAGGCTGAACTCACCGCTCAGGAAGTACgg < 1:600909/149‑1 (MQ=255) aaGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGc < 1:76066/149‑1 (MQ=255) actcTCAAAGCCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCACTGAACTCGATGCCCAGTTGCGGCAAACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGCACGGCTTCTGAc < 1:688154/146‑1 (MQ=255) tCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACCCATCGCTCAGGAAGTACGGCTTCTGACCGaa > 1:243992/1‑149 (MQ=255) cAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAg > 1:194282/1‑149 (MQ=255) aaaGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGACCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa > 1:226973/1‑149 (MQ=255) cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 2:221485/149‑1 (MQ=255) cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAAACGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 1:424130/149‑1 (MQ=255) gcgTGTCATATAGCCTTTCATCTCTGTCGCACCCGCGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGTAGCAAGATAGCAATCGACCAGGCGGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 2:571670/149‑1 (MQ=255) gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg > 2:383427/1‑149 (MQ=255) gggTCATATAGCCTTTCAGCTCTTTCGAACCGGGGCCGCTGAACTCGATGCCCAGTTGCGACAGACGACACAGCAGCGGACCAAGATAGCAATCGCGCAGGCTGAACCCATAGCTCAGGGAGTAAGGCTTCTGACCGCAGACCgggccg > 2:323873/1‑145 (MQ=255) gTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt > 1:448993/1‑149 (MQ=255) tCATATAGCCTTTCCGCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc < 2:661152/149‑1 (MQ=255) cATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCg < 1:170100/149‑1 (MQ=255) taGCCTTTCAGCTCTTGCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcag < 1:99160/149‑1 (MQ=255) aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagc > 2:637011/1‑149 (MQ=255) cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGGACTCCTCGTTCGGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGt > 1:73759/1‑149 (MQ=255) ccAGCTCGTCCCCACCCGGGCCGCTCAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCCGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttct < 1:721890/148‑1 (MQ=255) cAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttctt < 1:107756/149‑1 (MQ=255) aGCTCTTTCGCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCTAATACCGGCGCAATCGCCAGCAGttcttc < 2:923565/149‑1 (MQ=255) aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 2:307296/149‑1 (MQ=255) aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGAGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTGCTGACCGAAAACCGGCGCAACCGCGCGCAGttcttc > 2:706532/1‑149 (MQ=255) tctTTCGCCCCCGGGCCGCTGAACTCGATGCTAAAGCGCTTCATACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGAACGGCTTCTGAACATAGAACGGAGCAACCGTAAGCAGTTCTTcgcg < 2:671919/149‑1 (MQ=255) tccttcccccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcgcg < 1:26089/140‑1 (MQ=255) gCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAGCGCCAGCAGTTCTTCGCGCAGTTg > 2:619294/1‑149 (MQ=255) ccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGACAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 1:313053/148‑1 (MQ=255) aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCCGTTCTTCCCGCAGTTGCt > 2:192611/1‑149 (MQ=255) aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt > 1:768304/1‑149 (MQ=255) cccGGGCCGCTGAACTCGATGCCCAGTCGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCtt < 1:371626/149‑1 (MQ=255) cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGCCCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGGGCAGtagactcc > 2:647484/1‑142 (MQ=255) ggCCGCTGAACTCGACGCGCCGTTGCGGCTGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCACCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 1:18972/149‑1 (MQ=255) gCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCgg < 1:417032/149‑1 (MQ=255) gCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCCGTTCTTCGCGCAGTTGCTTACGTGCgg > 1:112896/1‑149 (MQ=255) tccaTGCCCAGGTGCGGCAGCAGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTCCGGCTTCTGACCGAAGACCGGCGCAAACGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:64834/146‑1 (MQ=255) tCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:114740/149‑1 (MQ=255) tCGATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc < 1:114718/149‑1 (MQ=255) gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCtt < 2:821638/149‑1 (MQ=255) gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCtt < 2:860703/149‑1 (MQ=255) gATGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGGTCTTCGCGCGATTGCTTACGTGCGGCGTCTGcct > 1:787111/1‑147 (MQ=255) aTGCCCAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTc > 1:835402/1‑149 (MQ=255) aTGCCCAGTTGCGGCAGACGGCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTc < 1:534530/149‑1 (MQ=255) ccAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGaa > 1:397573/1‑149 (MQ=255) cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg < 2:37106/149‑1 (MQ=255) cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg > 1:356813/1‑149 (MQ=255) cAGTTGCGGCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAg < 1:723816/149‑1 (MQ=255) cGGCTGACGTAACAGCAGCCGAGCAAGATACCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAAc < 2:187767/149‑1 (MQ=255) ggCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAAcc > 1:605984/1‑149 (MQ=255) gCAGACGTCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCg > 1:38766/1‑149 (MQ=255) | AGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370138‑3370423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |