| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2722802 = | 33 (0.700) | 6 (0.140) | 5/276 | 4.8 | 17.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4158259 | 27 (0.610) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGA > CP009273/2722661‑2722948 | tCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAGGGGCGGTGTCCTGGGCCTCTGGTCGTAGGGGACATGaaa > 2:50618/1‑149 (MQ=17) aaaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACAAGCAAGTGGCGTCAACTAGGGGATACGAACCACTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGaaaaa > 1:154136/1‑148 (MQ=14) aCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTg < 1:490841/149‑1 (MQ=255) cAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGCAAATTGc > 2:665353/1‑149 (MQ=255) gcttacgcgtgtGTTTTGAGATAGTGAGGGCGGCGACTTTCACTCACAAACGAGCAAGTGGCGGCCCCTAGGGGATTCGATCCCCTGTGACCGCCGTGAAAGGGCGGTGTCCTGGGCTTCTAGACGAAGGGGACACGAAAATTGCTTAt < 1:211823/138‑1 (MQ=11) ttAACAGTCTTTTTTGAGAGATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCa < 1:410246/149‑1 (MQ=255) ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTCGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACCAGAAAATTGCTTATcc > 1:27901/1‑148 (MQ=255) tAACAGTCTGTTTTGAGATATTGAGCTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCGCTCGACGAAGGGGACACGAGAATTGCTTATAAc > 1:25854/1‑149 (MQ=14) aCAGTCTGCTGTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGGTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc < 2:27901/149‑1 (MQ=255) tGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTCGACGAAGGGGACCCGCAAATTGGTTGTCACGCGTTgtg > 2:292932/1‑147 (MQ=11) tGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGGGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCg < 2:109498/149‑1 (MQ=17) ttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTTGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgcaacgcgtgat < 2:591857/149‑11 (MQ=255) gaTATTGAGGTCGGCGACTTTCACTCCCAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAttt < 2:423921/149‑1 (MQ=17) atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAtttt > 2:677430/1‑149 (MQ=32) tatTGAGGTGGGCGACTTTCACTCACAACCCATCAACTGGCGTCTCGTTGGGGATTGGAATCCCTGTTAACGTCGTGAAAGGGTGGTGTCCGGGGCCTCTAGAAGAAGGGGACACGAAAATTGCTTATAATGCGTTGTGTTATATTTTc < 1:339604/149‑1 (MQ=11) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTTCCCTAGGTGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc < 2:443773/149‑1 (MQ=17) atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAAATGCTTATCAGGCGTTGCGTGATATTTGCg > 1:561967/1‑149 (MQ=12) tCCTGGGCCTCCAGAGCAAGGGGACAGGAAAATTGCTTATCACGCGTTGGGTGATATTTTCGTGTAGGGTGAGCATTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt < 1:26387/149‑1 (MQ=11) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:658694/149‑1 (MQ=34) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTGGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:326563/149‑1 (MQ=18) tGGGCCGCTAGACGAAGGGGACACGAAAATTGCTGATCACGCGTTGCGTGATATTTTCGGGTAGGGTGAGCTTTCATTAATAGAAAGCGATCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:448012/149‑1 (MQ=255) gCCTCTAGACTAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 1:397480/149‑1 (MQ=37) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 1:665353/149‑1 (MQ=37) ccTCTATGCGAAGGGGACACGAAAATTGCTTATCACGTGTTGCTTGTTATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAATCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 1:216005/149‑1 (MQ=11) tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTACACGCCTTGCTATTCCCTTTTACTCAgc > 1:558247/1‑148 (MQ=255) tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTCATCGTGCGGTGGCGTTCTCCAAACGAGTAATAGCCTTGCTATTCAATTTTCATCCGa > 2:756372/1‑149 (MQ=11) tAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACa > 2:354265/1‑149 (MQ=37) tAGACGAAGGGGACACGAAAATTGCTTATAGAGCGTTGCGTGATCTTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCCTcacaca > 1:432532/1‑149 (MQ=11) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTAGCATGCGTTTTTCTTTCGTTAGTAGAAAGCGAACGGCCTTGTTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt > 1:582987/1‑149 (MQ=11) cGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 2:620527/149‑1 (MQ=39) gAAGGGGACACGAGAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCACTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg > 2:530313/1‑149 (MQ=255) ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 1:489631/149‑1 (MQ=39) ggACACGAAAATTGCTTATCACGCGTGGCCTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGa < 2:354238/149‑1 (MQ=255) | TCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGA > CP009273/2722661‑2722948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |