New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 223539	49 (0.700)	11 (0.160)	7/284	8.2	19.0%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	CP009273	2721269 =	NA (NA)					noncoding (1275/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCG  >  CP009273/223392‑223622                                                                                                                                                    |                                                                                    aTGCACCGAAGGTGCGGCAGCGACGGTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                                                    <  2:375032/149‑1 (MQ=255)  tGCACCGAAGCTGCGGCAGCGACGCTTATACGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACAATAAAGCGGGTGAAAAGCCCGCTCg                                                                                   >  2:698528/1‑149 (MQ=255)    cACCGAAGCTGCGGCAGCGACGCTTATGCGGTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                                                 <  2:1060971/149‑1 (MQ=255)     ggcggggCTGGGGCAGCGACGCTTATGCGGTGTTGGGTAGGGGAGCGTTCTGTATGCCTGTGAAGGTGTACTGTGAGGTATGGTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg                                                                                <  1:387246/143‑1 (MQ=11)              gCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                                       <  2:230520/149‑1 (MQ=38)               cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGCTAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                                                                      <  2:742009/149‑1 (MQ=37)                    gCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                                                 <  2:1006999/149‑1 (MQ=37)                      gaagCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                               <  2:960484/146‑1 (MQ=38)                        cGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCGGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt                                                             <  1:433727/149‑1 (MQ=37)                          gttATGCTTTGGTGGGTAGGGGATCGTTCTGTAAGCCTGTGAAGGTGTACGGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGACGACTAAGGGTTCCTGTcc                                                           <  1:425508/148‑1 (MQ=11)                            tATGCGTTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                                                         <  1:865951/149‑1 (MQ=38)                              tGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg                                                       <  2:1017951/149‑1 (MQ=38)                               gCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt                                                      <  2:943906/149‑1 (MQ=38)                                 gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAGGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa                                                    >  1:812497/1‑149 (MQ=25)                                 cttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa                                                    <  2:169602/148‑1 (MQ=25)                                      tgGGTAGGGGGGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgg                                               <  1:652086/149‑1 (MQ=21)                                       gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                              <  2:1008399/149‑1 (MQ=34)                                       gggTAGGGGAGCGTTCGGTAAGCCTGTGAAGGGGTACGGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                              <  1:537042/149‑1 (MQ=255)                                           gggggAGGGGTCTGCAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg                                          <  2:330641/148‑1 (MQ=255)                                           aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGGGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg                                          <  1:412286/149‑1 (MQ=21)                                           aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg                                          <  2:472227/149‑1 (MQ=35)                                            gggtAGCGTTCTGCAAGCCTGTGAAGGTGTACCGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                                         <  2:171203/149‑1 (MQ=255)                                            ggggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGGCAGAAGTAACGATAAATCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                                         <  1:558329/149‑1 (MQ=255)                                               gggCGTTCTGGAAGCCTGGGAAGGTGTACTGGGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGGAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTg                                      <  1:229727/147‑1 (MQ=255)                                                  cGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGGAGt                                   >  1:345697/1‑149 (MQ=25)                                                    ttCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGGCg                                 >  1:51942/1‑149 (MQ=25)                                                     tCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                                >  2:609198/1‑149 (MQ=35)                                                     tCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                                >  2:458773/1‑149 (MQ=35)                                                     tCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTCGAGGGATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                                <  2:1064147/149‑1 (MQ=21)                                                      cTGTAAGCCTGTGACGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc                               <  1:701264/149‑1 (MQ=25)                                                       tGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGACTGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTGGACGGAAGACCAAGGGTTCCTATCCAACGTTAATCGGGGCAGGGTGAGGCGGcc                              >  1:635110/1‑149 (MQ=11)                                                         tAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcccc                            >  2:730779/1‑149 (MQ=35)                                                            gCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCGAGGGTTGCTGTCCGACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa                         >  2:1065106/1‑149 (MQ=255)                                                             ccTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGCCAGGGGGAGTCGACCCCTAAg                        >  1:457165/1‑149 (MQ=25)                                                             ccTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTGAATCGGGGCAGGGGGAGTCGACCCCTaaa                        >  1:113866/1‑148 (MQ=255)                                                                 tgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCTGGGTGAGTCGACCCCTAAGGCGa                    <  2:635015/149‑1 (MQ=21)                                                                 tgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCCGACATACGTACAGATAAAGCGGGTCAAAAGCACGCCCGCCGGCAGACGAAGGGTACCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGTCCCCTAAGGCGa                    >  1:389207/1‑149 (MQ=11)                                                                   aaGGTGGACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAgg                  <  1:355960/149‑1 (MQ=21)                                                                    aGGTGTACTGTGAGGTATGCTGGAGGTATCAGACGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAACCGGGGCAGGGTGAGTCGACCCCTACGGCGAGGc                 <  2:837490/149‑1 (MQ=255)                                                                    aGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGGCGACCCCTCAGGCGAGGc                 >  1:405759/1‑149 (MQ=25)                                                                      gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGACGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACGCCTAAGGCGAGGCCg               >  2:774689/1‑149 (MQ=25)                                                                        gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTCATCGGGGCAGGGTGAGACGAACCCTAAGGGGAGGCCGaa             >  1:744982/1‑149 (MQ=255)                                                                        gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCACGACGGCGGGGCCGac             >  1:623858/1‑148 (MQ=255)                                                                            tgtgGGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGCAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGTGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc         <  2:950960/149‑1 (MQ=12)                                                                            tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCGGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc         >  2:30907/1‑149 (MQ=17)                                                                            tgtgAAGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc         <  1:659726/149‑1 (MQ=17)                                                                                 ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGACGAGGCCGAAAGGCGCAGt    >  2:204527/1‑149 (MQ=17)                                                                                 ggTATGCTGGAGGTATCAGAACTGCGAATGCCCACATAAGTAACAATAAAGGGGGTGAAAAGCCCGCTCGCCGGAAGACCACGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGt    <  1:458773/149‑1 (MQ=11)                                                                                   tATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCg  >  2:206304/1‑149 (MQ=11)                                                                                                                                                    |                                                                                    ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCG  >  CP009273/223392‑223622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.