| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 225231 | 57 (0.810) | 14 (0.210) | 6/284 | 8.7 | 20.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC > CP009273/225084‑225379 | gCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa > 1:786122/1‑149 (MQ=32)gCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGGTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa < 2:713504/149‑1 (MQ=17) gcgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTATGATAAAACCGAAGTTGc > 2:934519/1‑149 (MQ=12) aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTgg > 1:871345/1‑149 (MQ=32) gCGATGCGTTGAGCTAACCTGTCCTAATGAACCGTGAGGCTTACCCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGCGACGATTTTCAGCGTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc < 2:669494/149‑1 (MQ=11) gCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc < 2:47998/149‑1 (MQ=32) tGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc < 2:1017352/149‑1 (MQ=32) tGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc < 1:897201/149‑1 (MQ=33) gCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg < 2:724576/149‑1 (MQ=34) ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑g < 2:597535/149‑1 (MQ=34) taaGCGAACCTGTACTAAGGAACCGTGATGCTTAAGCTTAGAACGGCGAAGCTGTTTTGGCGGATTGAGAGAAGATGTTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑gc < 1:1083408/147‑1 (MQ=11) gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTATGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑gcg > 1:734841/1‑149 (MQ=21) gCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑Gcgcg < 1:1067931/149‑1 (MQ=34) cTAACCGGTACTAATGAACAGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTG‑GGGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAGACAGAATTTGCCTGGCGGACGTACgcgcgt > 1:777714/1‑148 (MQ=11) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGGGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCggt > 2:583773/1‑149 (MQ=21) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCggt < 2:586460/149‑1 (MQ=34) ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCggtggt < 1:964674/149‑1 (MQ=34) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTGTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTc > 2:739054/1‑149 (MQ=21) gTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGGAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTccc < 1:617958/149‑1 (MQ=21) gTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGCAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGGGGTccc > 1:423468/1‑149 (MQ=21) aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAGGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCAc < 1:613572/149‑1 (MQ=21) aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCAc < 2:815160/149‑1 (MQ=34) tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCt > 1:577956/1‑149 (MQ=34) gaaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCt < 1:448809/148‑1 (MQ=21) tGAACCGGTCGGCTCAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGAc < 1:719001/149‑1 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGAccc > 1:201826/1‑149 (MQ=34) cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGGTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGGTAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTACccccct > 1:907717/1‑147 (MQ=255) gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATg > 2:524270/1‑149 (MQ=34) gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCACACCGGTGCAGATTAAGTTAAAACGCAGAAGCGGTCTGATAAAGCTGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCAATg > 2:273771/1‑149 (MQ=11) tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGc < 1:871533/149‑1 (MQ=34) tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCAGACCCCATGc > 1:964663/1‑149 (MQ=21) aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGAGACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCg > 2:509846/1‑149 (MQ=21) gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGaa < 2:115514/149‑1 (MQ=34) tttatatcGCCGAAGCTGTTTGGGCGGATTGAGAGAAGATTCTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 2:765578/142‑1 (MQ=255) cTTACAACGCCGAAGCTGTTTTGGCGTATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAGAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 2:386128/149‑1 (MQ=21) cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCCGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 2:538691/149‑1 (MQ=21) ttACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAg > 2:598049/1‑149 (MQ=34) tACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt < 2:1087836/149‑1 (MQ=34) tACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt > 2:1026403/1‑149 (MQ=34) cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa > 1:391254/1‑149 (MQ=34) aaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaa < 2:578078/149‑1 (MQ=34) aaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaa < 1:192712/149‑1 (MQ=34) aaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGGGGTCCAACCTGAACCCATGCCCACCTCAGacacgaa > 1:741234/1‑143 (MQ=11) gCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCGACCTGACCCCATGCCGAGCTCAGAAGTGAAACg < 2:734841/149‑1 (MQ=21) gCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACg < 1:1137081/149‑1 (MQ=34) ttttGGCGGATTGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc > 1:779219/1‑149 (MQ=17) cGGATTGAGAGAAGAGTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTGCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATggg > 1:723434/1‑148 (MQ=17) ggATTGAGGGAAGATTTTCAGCGTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAACCGACGtggaaccaatggga < 1:301966/149‑14 (MQ=11) ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTa < 2:358149/149‑1 (MQ=32) gactgATTAAATCAGAACGCAGTAGCGGTCGGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTa < 1:774128/145‑1 (MQ=0) caaaaCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAg < 2:38647/146‑1 (MQ=1) gCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGCGGGGAACTGCCAGGCATCAAATTaa < 2:577956/149‑1 (MQ=11) cGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg < 2:980495/149‑1 (MQ=31) ggTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGc > 1:42586/1‑149 (MQ=17) tGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTGGCGCCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTGGGGAACTGCCAGACATCAAATTAAGCAGTa > 2:29013/1‑149 (MQ=255) tAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGc > 1:357952/1‑149 (MQ=31) tAAAACAGAATCTGCATGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGc < 2:988908/149‑1 (MQ=14) | GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTA‑GCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC > CP009273/225084‑225379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |