New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1973068	1 (0.020)	68 (1.090)	56/292	0.1	98.6%	intergenic (‑614/‑166)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

AATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1972921‑1973068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576788‑3576932                                                                                                                                                                                                                                                                                                       AATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTG                                                                                                                                                  <  1:1000174/149‑1     CCAGATAAGCTATTTTTAAACAGACACTTACCGCCCAACAAACTAATTAAATACAAAGAAAAGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGAACACTATTTTCTGGTGA                                                                                                                                              >  2:638381/1‑149        GATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGATTCAGTACACTATTTTCTGGTGATGC                                                                                                                                           <  2:576714/149‑1               TATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAAC                                                                                                                                    >  1:833903/1‑149               TATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAAC                                                                                                                                    <  1:795742/149‑1                ATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACg                                                                                                                                   <  2:764996/149‑2                  TTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACCAAGAAAGACAACAATCAACTTAATGTTAATGAAATGTTTTAAATATATTAAACACTTGTTTAATGCGGAGAATAAGTACACTATTTTCTGATGATGCGCCCAACTTc                                                                                                                                 >  1:801276/1‑148                        ACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATT                                                                                                                           <  1:714273/149‑1                        ACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAAAATCAGTACACATTTTTCTGGTGAGGATGCCAACTTACTGATT                                                                                                                           >  1:333464/1‑149                            ACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGT                                                                                                                       <  1:315448/149‑1                                TTACCGCACAACAAACTAATTAAATGCAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTAT                                                                                                                   >  2:517001/1‑149                                  ACCGCACAACAAACTAAGTAAATACAAAGAAAGGCAACCATCACCGTGATGTTAATGAAATGTTTCACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTGTGGTGATGCTGCCAACTTACTGATTTAGTGTATGA                                                                                                                 <  1:370426/149‑1                                   CCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                                                                                <  2:471836/149‑1                                      CACAACAAACTAATTAAATACAAAGAAAGGCAAGAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTCATGCTGCCAGCTTACTGCTTTAGGGTATGATGGT                                                                                                             >  1:64989/1‑149                                      CACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                                                                             <  1:126685/149‑1                                         AACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACCCTATTTTCTGGTGATGCTGCCAACTTCCTGATTTATTGTATGATGGTGTT                                                                                                          >  1:115986/1‑149                                              ACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                                                                     <  1:703761/149‑1                                                TAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTACTGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACAGAATTAGTTTATGATGCTTTTTTTGAtg                                                                                                   >  2:485691/1‑147                                                     AAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                                                                              <  1:608044/149‑1                                                           AAAGAAAGGCAACAATAAACTTAATGTTAATGAAATGTTTTACATATATTACCTACTTGTTTAATTCGTAAATTCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCATTGc                                                                                        >  1:730766/1‑148                                                              GAAAGGCAACAATCTACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                                                                     <  1:444623/149‑1                                                               AAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTC                                                                                    <  1:98553/149‑1                                                                AAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTGATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT                                                                                   <  1:683796/149‑1                                                                    CAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                                                               >  2:743338/1‑149                                                                     AACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTTATTTAGTGTATGATGGTGTTTTTGATGTGTTCCAGTGGCTTCTGTTTC                                                                              >  1:166345/1‑149                                                                           CAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                                                                        <  2:259045/149‑1                                                                           CAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                                                                        <  1:349180/149‑1                                                                            AACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGC                                                                       <  2:833903/149‑1                                                                             ACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                                                                      >  2:277543/1‑149                                                                              CTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTCCACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGTTTTTTAGGTGCTCAAGTGGCTTCTGTTTCTATCAGCTG                                                                     >  2:345025/1‑149                                                                              CTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGTGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTG                                                                     <  1:575987/149‑1                                                                                TAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGAGATGCTGCCAACTTACGGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCCGCTGTC                                                                   >  2:12943/1‑149                                                                                 AATGTTAATGAAATTTTTTACATATATTAAGCATTTGTTTGATGCGTAGAATCAGTACACTTATTTCTGGTGATGCGGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCATTGGCTTCTTTTTCTATCAGCTGTCC                                                                  <  1:939385/149‑1                                                                                    GTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGGACACTATTTTCTGGTGATGCTGCCAACTTACTGAGTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC                                                               <  1:638381/149‑1                                                                                      TAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCTAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT                                                             >  1:16092/1‑149                                                                                                  TTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG                                                 >  2:802438/1‑149                                                                                                      ATATATTTACCACTTGTTTAATGCGGTGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGAGGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGG                                             <  2:333464/149‑1                                                                                                      ATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                                                                              >  1:155145/1‑100                                                                                                      ATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTC                                                                                              <  2:155145/100‑1                                                                                                        agtTTAACCTCTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGTTGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGG                                           <  1:987512/146‑1                                                                                                        ATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGG                                           >  2:319726/1‑149                                                                                                        ATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGG                                           >  2:682436/1‑149                                                                                                            TAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGT                                       <  1:812317/149‑1                                                                                                              ACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATTCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGC                                     <  1:946877/149‑1                                                                                                              ACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAAC                                                                                                                                    >  1:62588/1‑54                                                                                                              ACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAAC                                                                                                                                    <  2:62588/54‑1                                                                                                              ACCACTTGTTGAATGCGGAGAATCAGTTAGCTATTTTCTGGTGATTCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTTCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTTAGCTACTGACGGGGTGGTGC                                     <  1:954882/149‑1                                                                                                               CCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGATGGTGCG                                    >  1:925985/1‑149                                                                                                               CCACTTGTTCAACGCGTATAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCG                                    <  1:417684/149‑1                                                                                                                   TTGTTTAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAcc                                >  2:983928/1‑147                                                                                                                    TGTATAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTAAGATGGTGTTTTTGAGGTGCTCCAGTGGCGTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACG                               <  2:361453/149‑1                                                                                                                        TAATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA                           <  1:517349/149‑1                                                                                                                         AATGCGGAGAATCAGTACCCTATTTTTCGGGGATGCTTCCAACTTACTTATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAA                          <  1:21911/149‑1                                                                                                                          ATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAA                         <  1:899837/149‑1                                                                                                                          ATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAA                         <  2:1029172/149‑1                                                                                                                          ATGCGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAA                         <  1:1017198/149‑1                                                                                                                           agcgggagATCCGTACTCTTTTTTTCGGCGAGGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTTCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAG                        <  1:238141/141‑1                                                                                                                             CGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAGCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTACAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCA                      >  2:297714/1‑149                                                                                                                             CGGAGAATCAGTACACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCA                      <  2:351208/149‑1                                                                                                                                          CACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCA         <  1:788826/149‑1                                                                                                                                           ACTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAG        >  2:808376/1‑149                                                                                                                                           ACTATTTTCTGGTGATGCTGCCAACTTAATGATTCAGTGTATGATGGTGTTTTAGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAACAG        >  2:568418/1‑149                                                                                                                                            CTATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGC       <  1:413647/149‑1                                                                                                                                             TATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG      >  2:416750/1‑149                                                                                                                                             TATTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG      >  1:765499/1‑149                                                                                                                                               gccaCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCATGTTCCGCTACGTACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCT    <  1:427846/145‑1                                                                                                                                               TTTTCTGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCT    >  1:183196/1‑149                                                                                                                                                 TTCTGGTGATGCTGCTAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  <  2:16092/149‑1                                                                                                                                                                                                                                                                                                       AATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1972921‑1973068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576788‑3576932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.