New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3710992	14 (0.490)	8 (0.280)	8/270	NT	36.4%	coding (323/975 nt)	ghrB	glyoxylate/hydroxypyruvate reductase B
	?	CP009273	4487998 =	NA (NA)					intergenic (+241/‑91)	intB/insC1	pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA

CTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  CP009273/4487854‑4488139                                                                                                                                                 |                                                                                                                                              cTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACCGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGAc                                                                                                                                           <  1:413264/149‑1 (MQ=255) cTGCAGGGGGGAGTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATATAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGAc                                                                                                                                           >  1:380697/1‑149 (MQ=255)   gCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCACGGATTTGATGGTCCCTTGTAGACTg                                                                                                                                         <  1:265861/149‑1 (MQ=255)         gcgATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAGACAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTg                                                                                                                                         <  2:351463/141‑1 (MQ=255)                  aGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGa                                                                                                                                >  2:337708/1‑143 (MQ=255)                       ccGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACGGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACa                                                                                                                     >  1:404391/1‑149 (MQ=255)                              tATTCATTAGTAATATACATTCAAGAAAACAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACaa                                                                                                                    <  2:109335/143‑1 (MQ=255)                                 tCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa                                                                                                           <  1:78451/149‑1 (MQ=255)                                                    aaTAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCACTTGTAGGCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATGGTCt                                                                                        >  1:122556/1‑149 (MQ=255)                                                       aaaaaaGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                     <  1:484558/149‑1 (MQ=255)                                                         aaaaGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                                                                         <  2:444719/143‑1 (MQ=255)                                                            aGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                <  1:521437/149‑1 (MQ=255)                                                              tacccTCATAGTAAATCCTGTACCCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTTGAGACTGGCCCCCTGAATCTCCAGACAACCAGAATTACTTAAATAAGTGATAGTCTTAAt                                                                                    <  2:336328/140‑1 (MQ=37)                                                                   tCATAAAAAATCCTGTACTCACAGGGTGATGCTGGATAACAGACGTAAGGAGTGCTGCAGGGATTTGATAGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGGCAACCAATATCACTTAAATAAGTGATAGTCTTCATACTAg                                                                               >  2:103698/1‑143 (MQ=37)                                                                   tCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                         >  1:61479/1‑149 (MQ=255)                                                                   tCATAAAAAATCCTGTACTCACAGGATGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                         >  1:316005/1‑149 (MQ=255)                                                                      tAAAAAATCCTGTACGCACAGGGTGATGCGGGATAACTGACGTACGGTGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCTCTGAATCTCCAGACAACCAATCCCACTTAAATACGTGATAGTCTTAATACTAGttt                                                                            <  2:135670/143‑1 (MQ=37)                                                                          aaaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGTCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                                                                        <  2:450218/143‑1 (MQ=255)                                                                                 gTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTc                                                                 <  2:211144/143‑1 (MQ=255)                                                                                  tACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                          <  1:328660/149‑1 (MQ=255)                                                                                  tACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                          >  1:185249/1‑149 (MQ=255)                                                                                  tACTCACAGGGTGATGCGGGATAACAGAGGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAACATCACTTAAATAAGTGACAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                          >  1:297221/1‑149 (MQ=255)                                                                                            gTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa                                                      <  2:445223/143‑1 (MQ=255)                                                                                                                  aGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCg                                <  2:242283/143‑1 (MQ=255)                                                                                                                    ggtgtctgcAGGGATTTGATTGTCCCTTTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGga                              <  2:328735/138‑1 (MQ=255)                                                                                                                        gcctcAGGGATTTGATTGTCCCTTGTAGCCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGa                    <  1:185777/145‑1 (MQ=255)                                                                                                                             aGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAg                     >  2:391873/1‑143 (MQ=255)                                                                                                                               ggATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTa             >  1:421986/1‑149 (MQ=255)                                                                                                                                   ttGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCg               <  2:248451/143‑1 (MQ=40)                                                                                                                                       tGGTCCCTTGGAGACTCGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAcc           <  2:251106/143‑1 (MQ=25)                                                                                                                                          tCCCTTGGAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaa  <  1:497175/149‑1 (MQ=18)                                                                                                                                              ttGTAGACTGGCCCCCTGAATCTCCAAACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTACTTGAAGGACAGATGATTGATGTCTGAGGGCCGGAGCAACGCAGACGGCGTGCcacccggg    >  2:419719/1‑138 (MQ=11)                                                                                                                                                gTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAggga  >  2:126920/1‑141 (MQ=11)                                                                                                                                                 |                                                                                                                                              CTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA  >  CP009273/4487854‑4488139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.