New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	21 (1.460)	17/274	NT	55.3%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	17 (1.180)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

TCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT  >  CP009273/359963‑360244                                                                                                                                               |                                                                                                                                             tCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGCTGATAAGCTGTC‑AAACATGAGACTTCCGATCCCCAATTCCTgg                                                                                                                                      >  1:122999/1‑150 (MQ=255)          tcaatcaaCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGtt                                                                                                                                 >  2:155569/1‑146 (MQ=255)          tcaatcaaCTGGTTACCTTGTGGACCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCAGACAAAAGATGA‑AATTCCGATCCCCAATTCCTGGCAGtt                                                                                                                                 >  2:49045/1‑146 (MQ=255)                   attttACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGTGGCTTTCCTACCGGCGCCACCGACCAGTGCAGGAGCTCCCATGCTAAGCTGTC‑AAACATGGGACTTCCGATCCCCAATTCCTGGCAGTTTATggcggg                                                                                                                        <  2:143722/144‑1 (MQ=255)                         ccTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc                                                                                                              <  1:119925/150‑1 (MQ=255)                                                    tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc                                                                                       >  2:9490/1‑146 (MQ=255)                                                     cACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg                                                                                      >  2:76342/1‑146 (MQ=255)                                                                            tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                           <  1:176851/150‑1 (MQ=255)                                                                             ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt                                                          <  1:86925/150‑1 (MQ=255)                                                                                   ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGACCCCCGATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                        <  2:16674/146‑1 (MQ=255)                                                                                                 aGGAGCTCTGTTGATAAGCTGTC‑AAACATGAGAATTCCGTTCCCCTTCTCTTGACTATTTATGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt                                      <  1:247220/150‑1 (MQ=17)                                                                                                        ccGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCGCCCGGCGGACGTGTCCTACTCGGGAGCGCGTTcc                                   >  2:107579/1‑145 (MQ=18)                                                                                                                          aaCAGGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc              <  1:48794/150‑1 (MQ=255)                                                                                                                                agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg        <  1:206804/150‑1 (MQ=255)                                                                                                                                      ccGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCCCGGCCGTTGCTTCGCCACGTTCAAATCCGCTCCCGGCGGATTTGTCCTTCTCAGGGGAGCGGTCACCCACCAACAACCGATAAAACAAAAGGCCCAGt  >  1:101857/1‑150 (MQ=14)                                                                                                                                               |                                                                                                                                             TCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTC‑AAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGT  >  CP009273/359963‑360244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.