| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 67 (0.770) | 54/290 | 0.8 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 85 (0.980) | 60/290 | 0.5 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
Only 100 of 153 total aligned reads displayed.
GCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTT > CP009273/2400110‑2400403 | cTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAGCAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTGTCATCCGGAACCCGGACGAGAGTAAAAATGCATATGAGTTGCACTAAg < 1:49183‑M2/149‑2 (MQ=255) atatatTATCACTTACTGGCGGCTCATACTGAGCTGGTCAATGCTGTGCACCCACAACCAAGCAATTCCATTTGTCATGTGCCTCCCTGGCCGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAg < 2:1014228‑M2/143‑2 (MQ=255) tatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTACCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtt < 1:117445‑M2/149‑9 (MQ=255) tctagcccttactcgCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaag > 2:335888‑M2/8‑138 (MQ=255) atCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaaca < 1:224127‑M2/149‑15 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaa > 1:678041‑M2/1‑134 (MQ=255) ccgatctctggcggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgc > 2:770162‑M2/8‑134 (MQ=255) gatggcgaagaaacggtctaaataggctgattcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGtt < 1:839513‑M2/23‑1 (MQ=255) tACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccc > 1:167169‑M2/1‑129 (MQ=255) aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccct > 1:984186‑M2/1‑128 (MQ=255) aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaa > 2:257082‑M2/1‑128 (MQ=255) cgaagaaactgtcaaaacagcctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGtt < 1:377289‑M2/28‑1 (MQ=255) cggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACTAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatat > 1:280079‑M2/1‑123 (MQ=255) cggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatat > 1:1300909‑M2/1‑123 (MQ=255) aagacgctgtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaattgactgagtcagcccagaagaatttccctgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTc < 2:486837‑M2/24‑1 (MQ=255) cTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTACACTAAggaaggtgcgaacaagcccctga < 2:9871‑M2/143‑24 (MQ=255) aacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATg > 1:1370445‑M2/116‑149 (MQ=255) aTCCTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatc > 1:1388692‑M2/1‑117 (MQ=255) gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagacgaatcaccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATaa < 2:684110‑M2/32‑1 (MQ=255) tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAAt < 2:1046090‑M2/33‑1 (MQ=255) tctaaataggctgattcaaggcataaacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAACGAATCACATTGTTCCGCTTTAAt > 2:1047363‑M2/111‑143 (MQ=255) ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa > 1:26093‑M2/110‑149 (MQ=255) ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa < 1:989247‑M2/40‑1 (MQ=255) ctaaataggctgatgcaaggcatttacgggagaaaagatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatctccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa < 1:1060170‑M2/40‑1 (MQ=255) taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGc > 2:1146889‑M2/109‑143 (MQ=255) aaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGt > 1:1045285‑M2/108‑149 (MQ=255) ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg > 1:1030390‑M2/106‑149 (MQ=255) taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa < 1:1041026‑M2/45‑1 (MQ=255) tGGTTAATGCTGTACACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc > 1:560774‑M2/1‑108 (MQ=255) aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 1:613021‑M2/46‑1 (MQ=255) aggctgattcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCTCATTGTTCCGTTATAATGCCTGaa < 2:1244414‑M2/40‑1 (MQ=255) tAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagctcatgtttg < 2:320854‑M2/143‑40 (MQ=255) ctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagcatatccccgcttattcgctccctccCTAAAAGAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa < 2:197816‑M2/43‑1 (MQ=255) tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaggaaattccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTACATcaca > 1:1323261‑M2/100‑149 (MQ=255) tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTAAAAATGCATCTGCGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctgga < 1:228393‑M2/149‑49 (MQ=255) tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:507329‑M2/1‑101 (MQ=255) gCTGTGCACACACCAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat > 2:879342‑M2/1‑100 (MQ=255) gCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGGAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgccacccactcccagagacgagatcatgtttgtcatctggag < 1:200977‑M2/149‑50 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGTCACTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 2:1272562‑M2/1‑99 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc > 1:179329‑M2/1‑99 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 1:1255508‑M2/149‑51 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagagcatgtttgtcatctggagc < 1:1226247‑M2/149‑51 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATGTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc > 1:222042‑M2/1‑99 (MQ=255) tgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgaaatgggatcgtgttggtcatctgg < 2:1311248‑M2/143‑48 (MQ=255) acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 2:49219‑M2/143‑51 (MQ=255) caaacaaGCAATTCCATTTGTAACGTGCCTCCCTGGCAGTTTCCTCCGCAACCCGGACGAAAGTAAAAAGGCATATGAGTTGCACGAAggaaggtgcgaacaagtccctgatatgagagcatgtttgtcatctggagccatagaacagg > 1:394260‑M2/1‑88 (MQ=255) aaaccaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCAGAAAGTAAAAATGCATCTGAGTTGCACTAAggaaggtgcgaacaagtcactgctatgagatcatgtttgtcatctggagccataga < 2:419230‑M2/143‑57 (MQ=255) aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:1321436‑M2/149‑63 (MQ=255) gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa > 1:1016004‑M2/83‑149 (MQ=255) ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTc > 2:255973‑M2/82‑143 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg < 2:443979‑M2/64‑1 (MQ=255) aaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaagttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa < 1:601356‑M2/72‑1 (MQ=255) aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAt < 2:74622‑M2/68‑1 (MQ=255) ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 1:1227467‑M2/1‑77 (MQ=255) cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca < 2:1391267‑M2/143‑70 (MQ=255) cATTTGTAATGTGCCTCCCTGGCAGTTTCAACCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggcgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggggtcaccatgagtc < 1:879542‑M2/149‑76 (MQ=255) ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc > 1:441910‑M2/1‑71 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAg < 1:707651‑M2/83‑1 (MQ=255) gTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa < 1:838931‑M2/149‑81 (MQ=255) tAATGTGCCGCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac > 1:114220‑M2/1‑68 (MQ=255) accatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCCAAAACAGCGACTCCCATTGTTCCGTCATTATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTa < 1:887225‑M2/86‑1 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTGTTAACTTa > 1:1197725‑M2/64‑149 (MQ=255) aTGTGCGTCCCTGGCAGTTTAATCCGGAACCCGGACGAAAGTAAAAATGCATAGGAGTAGCGCAACtgaaggtgcgaacaagtccctgatatgagatcatgcttgtcatctcgagccatagaacagggttcatcatgagtcat < 2:398344‑M2/143‑78 (MQ=255) atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAg < 2:23228‑M2/83‑1 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcact < 1:1266657‑M2/92‑1 (MQ=255) atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAACGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt < 1:478610‑M2/97‑1 (MQ=255) gCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCCTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccagaaaacagggttcatcatgaggcatcaacttaccttcgccgaca < 1:1436654‑M2/149‑97 (MQ=255) atgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt > 2:1086905‑M2/48‑143 (MQ=255) tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga > 1:1062084‑M2/1‑49 (MQ=255) tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgattgtcatctggagccatagaacagggttcatcataggtcatcaactaaccttcgccca < 2:661609‑M2/143‑95 (MQ=255) tgagtcagccgagaagaatttccccgcttattcgcacattccGTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATCTCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt > 2:912051‑M2/43‑143 (MQ=255) aTCCGGAACCCGGACGAAAGTAAATATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc < 1:1112408‑M2/149‑105 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttcccttcgccgacagtgaattcagc < 1:1306885‑M2/149‑108 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttctCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc < 1:434873‑M2/112‑1 (MQ=255) gccgGACGAAAGTAAAAATGCATATGAGTTGCGCCACggaaggtgcgaacaaggcccggataggagatcatgttttccatctggagccagagaacagtgttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 2:564516‑M2/2‑37 (MQ=255) gacaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATg < 2:644813‑M2/111‑1 (MQ=255) ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgggtcatcaacttaccttcgccgacagtgaattcagcagtaag < 1:566985‑M2/149‑114 (MQ=255) tgacggatccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCAGAAATAGATCACAGAATATATCTTCAGGGATCGAATATCTATTAAGTTACTCACTCTTTTCTATTTATGACAtgcga > 2:1142381‑M2/30‑142 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTCAGTTACTCACTCTTTTCTATTTATGACATGCGCgt > 2:1368285‑M2/28‑143 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 1:739344‑M2/122‑1 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTCTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 1:789733‑M2/122‑1 (MQ=255) gAAAGTAAAAATGCATCTGAGTTCCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt > 1:1149896‑M2/1‑30 (MQ=255) aaaGCAAAAATGCATAGGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 2:553003‑M2/1‑29 (MQ=255) tAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttatcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg < 2:612609‑M2/143‑119 (MQ=255) ccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 1:1155616‑M2/128‑1 (MQ=255) cgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaaggta > 1:1295203‑M2/19‑149 (MQ=255) aaaTGCATATGAGTTGCACTAAggaaggtgcgaacaagtcgctgatatgagatcatgtttgtcatctggggccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcggtca < 2:706416‑M2/143‑122 (MQ=255) aaaTGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccag < 1:763687‑M2/149‑128 (MQ=255) cttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaa < 2:932549‑M2/127‑1 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGCTCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 2:1031265‑M2/128‑1 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat < 1:278108‑M2/134‑1 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 2:1065538‑M2/128‑1 (MQ=255) atatGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcaacaacttatcgtcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga > 1:1410676‑M2/1‑16 (MQ=255) atGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttcccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga > 1:1144331‑M2/1‑14 (MQ=255) gTTGCACTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga > 2:933012‑M2/1‑10 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactttccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc > 1:50468‑M2/1‑9 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacaagaaaagag < 2:832602‑M2/143‑135 (MQ=255) tccCTAAGAAAGCGACTCACATTTTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAACTTCAGGGATCGCATATCTATTAAGTTACTCACGCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGt < 2:531305‑M2/140‑1 (MQ=255) cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagagccgtcagaccagaaaagagatcttcttg < 1:1110737‑M2/149‑144 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcacaagtaagcgccgtcagaccagcaaagagattg < 2:375210‑M2/143‑139 (MQ=255) | GCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTT > CP009273/2400110‑2400403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |