New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3940048	87 (1.000)	24 (0.290)	7/278	11.5	22.4%	intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
	?	CP009273	= 4033841	NA (NA)					intergenic (+58/‑36)	rrlA/rrfA	23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

GCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAAC  >  CP009273/4033826‑4033986                |                                                                                                                                                  gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGTGTGGGGTctcct                    >  2:1366823/1‑143 (MQ=11)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGCCAGTAGCGCTGGGGTCACACCTGACCCCATGCCGAACTCAGAAGTAAAACGCCGTAGCGCCGGTGGTAGTGGGGGGTGTCCTCAGTCgagtga         >  1:160538/1‑146 (MQ=11)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAACCGCCGTATCGCTGATGGTAGTGTGGGGTCTCCTCATGc               <  2:1016621/143‑1 (MQ=12)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGc               <  2:746127/143‑1 (MQ=32)       aaCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTGCTCATGCg              >  2:1303059/2‑143 (MQ=17)        aaaGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAg       <  1:1351690/147‑1 (MQ=17)         gaGATCAAATCAGAACGCAGAAGCGGTCTGATAAAGCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCgag            <  2:619646/142‑1 (MQ=17)         ccgactAAATTCGAACGCAGAAGCGGGCCGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCTCATGCgag            <  2:143003/138‑1 (MQ=11)          ggATTAAATCGGAGCGCAGAAGCGGTCTGATAACACAGAAGTTGCCTGGCGGCAGTAGCGCGGTGGTGCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGAAGTAACTCGGATGGTAGTGTGGGGTCTCCTCATGCgaga           <  2:299285/142‑1 (MQ=11)             ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTa        <  2:170820/143‑1 (MQ=32)             ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAAc  >  1:1484191/1‑149 (MQ=32)              tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGCAGTGAAACGCCGGAGCGCCGATGGTCGTGGTGGGTCTCCTCATGCGAGGGTAg       >  2:239908/1‑143 (MQ=11)              tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAg       >  2:1047362/1‑143 (MQ=32)               aaaTCAGAACGCAGAAGCGGTCTGATAAAACAGCATTTGCTCGGCTGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAgg      <  2:969673/143‑1 (MQ=255)               aaaTCAGAACGCAGAAGCCGCCCAAAAAAACAGAACTACCCCCCCGGTAGTGGGGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAgg      <  2:543182/143‑1 (MQ=11)                aaTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAggg     <  2:1137245/143‑1 (MQ=32)                |                                                                                                                                                  GCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAAC  >  CP009273/4033826‑4033986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.