New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4033841	NA (NA)	25 (0.300)	9/278	10.4	46.5%	intergenic (+58/‑36)	rrlA/rrfA	23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
	?	CP009273	= 4033865	30 (0.350)					intergenic (+82/‑12)	rrlA/rrfA	23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

GCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG  >  CP009273/4033826‑4034012                                        |                                                                                                                                                    gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGTGTGGGGTctcct                                              >  2:1366823/1‑143 (MQ=11)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGCCAGTAGCGCTGGGGTCACACCTGACCCCATGCCGAACTCAGAAGTAAAACGCCGTAGCGCCGGTGGTAGTGGGGGGTGTCCTCAGTCgagtga                                   >  1:160538/1‑146 (MQ=11)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAACCGCCGTATCGCTGATGGTAGTGTGGGGTCTCCTCATGc                                         <  2:1016621/143‑1 (MQ=12)      aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGc                                         <  2:746127/143‑1 (MQ=32)       aaCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTGCTCATGCg                                        >  2:1303059/2‑143 (MQ=17)        aaaGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAg                                 <  1:1351690/147‑1 (MQ=17)         gaGATCAAATCAGAACGCAGAAGCGGTCTGATAAAGCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCgag                                      <  2:619646/142‑1 (MQ=17)         ccgactAAATTCGAACGCAGAAGCGGGCCGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCTCATGCgag                                      <  2:143003/138‑1 (MQ=11)          ggATTAAATCGGAGCGCAGAAGCGGTCTGATAACACAGAAGTTGCCTGGCGGCAGTAGCGCGGTGGTGCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGAAGTAACTCGGATGGTAGTGTGGGGTCTCCTCATGCgaga                                     <  2:299285/142‑1 (MQ=11)             ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTa                                  <  2:170820/143‑1 (MQ=32)             ttAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAAc                            >  1:1484191/1‑149 (MQ=32)              tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGCAGTGAAACGCCGGAGCGCCGATGGTCGTGGTGGGTCTCCTCATGCGAGGGTAg                                 >  2:239908/1‑143 (MQ=11)              tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAg                                 >  2:1047362/1‑143 (MQ=32)               agagcAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGGCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGTTCCGATGGTCGTCTGGGGTCTCCTCATGCGAGAGTAgg                                <  2:361132/139‑1 (MQ=11)               aaaTCAGAACGCAGAAGCGGTCTGATAAAACAGCATTTGCTCGGCTGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAgg                                <  2:969673/143‑1 (MQ=255)               aaaTCAGAACGCAGAAGCCGCCCAAAAAAACAGAACTACCCCCCCGGTAGTGGGGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAgg                                <  2:543182/143‑1 (MQ=11)                aaTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAggg                               <  2:1137245/143‑1 (MQ=32)                 aTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGa                              >  2:1013961/1‑143 (MQ=32)                 aTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGGGTGGGGTCTCCTCATGCGAGCGCAGGGa                              >  2:108618/1‑143 (MQ=12)                 aTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGGAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGa                              >  2:126008/1‑143 (MQ=17)                    cctaCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTACCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTCGCGCCGATGGTAGGGTGGGGTCTCCTCATGCGAGAGTAGGGAAcg                           >  2:153127/4‑142 (MQ=255)                    aGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTGGGGAACt                           >  2:431193/1‑143 (MQ=17)                      aaCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCa                   >  1:630510/1‑149 (MQ=32)                        cGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCa                       >  2:481152/1‑143 (MQ=32)                                cGGTCTGATAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaaaa         <  1:1301794/149‑1 (MQ=17)                                 ggTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAGGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAc        <  1:1130437/149‑1 (MQ=17)                                   tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATa            >  2:797075/1‑143 (MQ=32)                                   tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGa      >  1:1230021/1‑149 (MQ=32)                                      gATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaaaa         <  2:656455/143‑1 (MQ=32)                                       aTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGATGGTCCCACCTGACCCCATGCCGAACTCGGAAGTGAAACGCCGTAGCGCCGGTGGTAGGGTGGGGTCGCCTCATGCGAGAGTAGGGAACTGCCAGGCAACAAATAAAACGAAAgg  >  1:285748/1‑149 (MQ=11)                                        |                                                                                                                                                    GCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG  >  CP009273/4033826‑4034012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.