mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 926,182 | 0 | C | A | 44.5% | 125.4 / inf | 218 | intergenic (‑211/+43) | serW/infA | tRNA‑Ser/translation initiation factor IF‑1 |
| * | NC_000913 | 4,296,190 | 0 | A | G | 22.4% | 76.7 / 18.8 | 50 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.4% | 66.4 / 23.8 | 50 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 240 (1.100) | 30 (0.150) | 23/458 | 8.8 | 12.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 195 (0.950) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 229 (1.050) | 20 (0.100) | 18/458 | 10.3 | 8.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 195 (0.950) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2765420 = | 150 (0.690) | 6 (0.030) | 6/402 | 14.5 | 4.9% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 109 (0.610) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 7 (0.040) | 4/412 | 16.1 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 2877912 | 233 (1.070) | 3 (0.020) | 3/428 | 17.3 | 1.5% | intergenic (+294/+657) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2877974 = | 200 (1.050) | intergenic (+356/+595) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | 2566834 = | 186 (0.850) | 5 (0.020) | 4/470 | 17.4 | 2.7% | coding (51/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | NC_000913 | = 2566830 | 183 (0.870) | coding (55/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 4 (0.020) | 4/472 | 17.4 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4015247 | 233 (1.070) | 4 (0.020) | 4/476 | 17.5 | 1.8% | coding (2195/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| ? | NC_000913 | = 4015259 | 214 (1.010) | coding (2207/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase | |||||
| * | ? | NC_000913 | 3530285 = | 178 (0.810) | 4 (0.020) | 4/480 | 17.6 | 2.2% | coding (512/879 nt) | hslO | heat shock protein Hsp33 |
| ? | NC_000913 | = 3530281 | 174 (0.810) | coding (508/879 nt) | hslO | heat shock protein Hsp33 | |||||
| * | ? | NC_000913 | 4369536 = | 150 (0.690) | 3 (0.010) | 3/472 | 18.2 | 1.7% | coding (877/1257 nt) | yjeH | putative transporter |
| ? | NC_000913 | 4369922 = | 197 (0.940) | coding (491/1257 nt) | yjeH | putative transporter | |||||