mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4528083 = | 127 (1.110) | 3 (0.030) | 3/452 | NT | 2.5% | intergenic (+17/+28) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase |
| ? | NC_000913 | 4528108 = | 113 (1.040) | intergenic (+42/+3) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase | |||||
| * | ? | NC_000913 | = 4463242 | 127 (1.110) | 4 (0.040) | 4/454 | NT | 2.6% | coding (1468/1656 nt) | treC | trehalose‑6‑P hydrolase |
| ? | NC_000913 | = 4463439 | 172 (1.570) | coding (1271/1656 nt) | treC | trehalose‑6‑P hydrolase | |||||
| * | ? | NC_000913 | = 4007148 | 126 (1.110) | 4 (0.040) | 4/452 | NT | 3.1% | coding (1285/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | NC_000913 | = 4007287 | 132 (1.210) | coding (1424/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | 4002388 = | 109 (0.960) | 4 (0.040) | 4/452 | NT | 3.7% | intergenic (+12/+31) | corA/yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| ? | NC_000913 | 4002413 = | 103 (0.940) | intergenic (+37/+6) | corA/yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein | |||||
| * | ? | NC_000913 | = 3908639 | 164 (1.440) | 3 (0.030) | 3/472 | NT | 1.8% | coding (801/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3908643 = | 170 (1.490) | coding (797/891 nt) | pstA | phosphate ABC transporter permease | |||||
| * | ? | NC_000913 | = 3461875 | 153 (1.380) | 5 (0.040) +TTG |
3/454 | NT | 3.2% | coding (408/510 nt) | gspH | putative general secretory pathway component, cryptic |
| ? | NC_000913 | 3461876 = | 154 (1.350) | coding (409/510 nt) | gspH | putative general secretory pathway component, cryptic | |||||
| * | ? | NC_000913 | = 3312179 | 167 (1.460) | 3 (0.030) | 3/462 | NT | 1.8% | coding (599/945 nt) | truB | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
| ? | NC_000913 | = 3312190 | 170 (1.520) | coding (588/945 nt) | truB | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | |||||
| * | ? | NC_000913 | 3248814 = | 115 (1.010) | 4 (0.040) | 4/452 | NT | 3.6% | coding (376/384 nt) | mzrA | modulator of EnvZ/OmpR regulon |
| ? | NC_000913 | 3248839 = | 106 (0.970) | intergenic (+17/‑130) | mzrA/yqjC | modulator of EnvZ/OmpR regulon/DUF1090 family putative periplasmic protein | |||||
| * | ? | NC_000913 | = 2645193 | 94 (0.820) | 3 (0.030) | 3/466 | NT | 3.0% | coding (2133/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| ? | NC_000913 | = 2645256 | 103 (0.920) | coding (2070/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein | |||||
| * | ? | NC_000913 | 862446 = | 104 (0.910) | 3 (0.030) | 3/456 | NT | 3.2% | coding (161/2433 nt) | ybiW | putative pyruvate formate lyase |
| ? | NC_000913 | 862516 = | 82 (0.740) | coding (91/2433 nt) | ybiW | putative pyruvate formate lyase | |||||