mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 39.5% | 42.4 / 19.8 | 43 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 44 (0.460) | 4 (0.040) | 4/486 | 9.6 | 6.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 72 (0.780) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4594494 = | 100 (1.040) | 3 (0.030) | 3/488 | 10.2 | 3.8% | coding (229/1362 nt) | lgoT | putative L‑galactonate:H+ symporter |
| ? | NC_000913 | 4597749 = | 57 (0.610) | coding (1693/2292 nt) | opgB | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) | |||||
| * | ? | NC_000913 | 4382726 = | 106 (1.100) | 3 (0.030) | 3/484 | 10.2 | 2.7% | coding (84/978 nt) | epmA | Elongation Factor P Lys34 lysyltransferase |
| ? | NC_000913 | 4383265 = | 113 (1.230) | coding (623/978 nt) | epmA | Elongation Factor P Lys34 lysyltransferase | |||||
| * | ? | NC_000913 | 3924052 = | 87 (0.910) | 3 (0.030) | 3/484 | 10.2 | 3.3% | coding (1582/1890 nt) | mnmG | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| ? | NC_000913 | 3924207 = | 94 (1.020) | coding (1427/1890 nt) | mnmG | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 | |||||
| * | ? | NC_000913 | 3817574 = | 126 (1.310) | 3 (0.030) | 3/486 | 10.2 | 2.4% | intergenic (+35/‑186) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein |
| ? | NC_000913 | 3817604 = | 118 (1.280) | intergenic (+65/‑156) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein | |||||
| * | ? | NC_000913 | = 1742580 | 70 (0.730) | 3 (0.030) | 3/486 | 10.2 | 4.2% | intergenic (+19/+21) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit |
| ? | NC_000913 | = 1742585 | 70 (0.760) | intergenic (+24/+16) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit | |||||
| * | ? | NC_000913 | = 1033307 | 69 (0.720) | 3 (0.030) | 3/488 | 10.2 | 4.0% | coding (54/1794 nt) | hyaB | hydrogenase 1, large subunit |
| ? | NC_000913 | = 1033479 | 79 (0.850) | coding (226/1794 nt) | hyaB | hydrogenase 1, large subunit | |||||
| * | ? | NC_000913 | 223366 = | 128 (1.330) | 3 (0.030) | 3/488 | 10.2 | 2.4% | coding (534/576 nt) | gmhB | D,D‑heptose 1,7‑bisphosphate phosphatase |
| ? | NC_000913 | 223817 = | NA (NA) | noncoding (47/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 4162839 | 103 (1.070) | 4 (0.040) | 3/490 | 10.3 | 3.8% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162849 | 101 (1.080) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | = 3510516 | 116 (1.210) | 3 (0.030) | 3/492 | 10.3 | 3.3% | coding (461/1164 nt) | yhfX | putative pyridoxal 5'‑phosphate binding protein |
| ? | NC_000913 | = 3511036 | 62 (0.660) | intergenic (‑60/+24) | yhfX/yhfY | putative pyridoxal 5'‑phosphate binding protein/PRD domain protein | |||||