New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 224973	31 (0.400)	7 (0.090)	6/268	9.9	19.1%	noncoding (1203/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	2729970 =	NA (NA)					noncoding (1186/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/224831‑224973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatcCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCT  >  NC_000913/2729970‑2730110                                                                                                                                                                                                                                                                                              GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC                                                                                                                                               <  2:394191/143‑1                                                                                                                CTGGAGGAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTT                                                                                                          >  1:255227/1‑69                                                                                                                CTGGAGGAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTT                                                                                                          <  2:255227/69‑1                                                                                                                      GAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCCCGTTGCGGGACTTAACCCACCATTTCACAACACGA                          >  1:1215191/1‑143                                                                                                                         GGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAGCACGAGCT                       >  2:1163064/1‑143                                                                                                                          GTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTG                      >  2:969614/1‑143                                                                                                                          GTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCGTTGAGTTCCCGGCCGGACCGCTGGCAACAACGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATGTCACAACACGAGCTG                      >  1:942687/1‑143                                                                                                                           TGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGGTCCCGGCCGGACCGCTGGCAGCACAGGACAAGGGTTGCGCTCGTTGCGGGCCTTCCCCCAACATCTCACAACCCGCGCGGA                     >  2:1003641/1‑143                                                                                                                                          GTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGAAACAGGTTTGCCATAGCTGCGGTACTTAACCCAACATTTCACAACACGAGCTGACGAGCGCCAAGCAGa      >  1:284495/1‑142                                                                                                                                           TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACTACACGAGCTGACGACAGCCATGCAGCA     <  2:460599/143‑1                                                                                                                                           TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCA     >  2:1126983/1‑143                                                                                                                                           TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCA     <  2:1252796/143‑1                                                                                                                                           TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTAAACCCAACATTTCACAAAACGAGCTGACGAACGCCAGGCAGac     >  1:791773/1‑141                                                                                                                                           TCATCCCCACCTTCCTCCAGTTTATCACTGGAAGTCTCCTTTGATTTCCCGGCCGGACCGCTGTCTACAATCGATACGGGTTGCGATCGTTGGTGGTCTCAACCCAACATTTCACCACCCGAGCTGACGACAGCCATGCAGCA     >  2:1130036/1‑143                                                                                                                                            ccTCCCCACCTTCCGCCAGTTCATCACTGGCAGTGTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGGGGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC    <  1:1330062/141‑1                                                                                                                                            CATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC    >  2:1038370/1‑143                                                                                                                                            CATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC    >  2:994203/1‑143                                                                                                                                             ATCCTCACCTCCCTCCAGTTTATCCCTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACC   <  2:20992/143‑1                                                                                                                                             ATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGCGTTCCCGGCCGGACCGCTGGCAACCAAGGATCAGGGTTGCGCTCGTTGCGGGGCTGACCCCCACATTCCACAACACGAGCTGCCGCCACCCACGCCGCACC   >  1:1103486/1‑143                                                                                                                                             ATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGGTCGTTGCGGGACTTAAGCCAACATTTCACAAGACGAGCTGGCGACAGGCATGGAGCACg   >  2:96543/1‑142                                                                                                                                             ATCCCCACCTTCCGCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGCCCGGACCGCTGGCCACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCCACATTTCACAACCCGCGCTGACGCCAGCCATCCAGAACC   >  1:489396/1‑143                                                                                                                                              TCCCCACCTTCCTCCAGTTTATCCCTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGCTAAGGGTTGCGCTCGTTGCGGGACCTCACCCAACCTTTCACCACACGAGCTGACGACAGCCCTCCACCACCT  >  2:1249619/1‑143                                                                                                                                                                                                                                                                                              GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/224831‑224973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatcCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCT  >  NC_000913/2729970‑2730110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.