New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4153627	50 (0.800)	4 (0.080) +CTACAGTGACTCAAACGATGCCCAAC	4/230	7.6	8.9%	noncoding (282/346 nt)	REP309 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP309 (repetitive extragenic palindromic) element, contains 6 REP sequences
	?	NC_000913	= 4153692	NA (NA)					intergenic (‑595/+3)	ppc/argE	phosphoenolpyruvate carboxylase/acetylornithine deacetylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATA  >  NC_000913/4153485‑4153769                                                                                                                                               |                                                                                                                                                gcgcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATGGCATCCGAc                                                                                                                                                 >  1:924737/1‑143 (MQ=37)  cgcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGCTAAGATGCGCGAGCGTCGCATCCGGCa                                                                                                                                                >  1:124314/1‑143 (MQ=255)              aTCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTTGGTACCGTCAGAGACACTGTAGGTCGGATAAGATGCGCTCGCAGCGGATCCGCCAGAACTGCggagc                                                                                                                                    >  2:669051/1‑140 (MQ=11)               tCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGATCAGCTTGGAGTCTCAAGCATCGCATCCGACATTATTGCGGCACt                                                                                                                                   <  1:749809/143‑1 (MQ=11)                     attattGCGGAGCTGGAGTTTGGCAACAGTGAGGGAGGCGGCACGAGCGGGTTATGGGGCCTACGGTTGGGAATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGtt                                                                                                                             <  1:456163/143‑1 (MQ=14)                      gtattGCGGCACCGGAGATTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGttt                                                                                                                            <  1:529243/142‑1 (MQ=255)                          tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCCCTGGAGTTTGGCa                                                                                                                        >  1:1008785/1‑143 (MQ=38)                                       tttGGCAACAGTGCCTGATGCGGCGCGTGCGCCTTTTCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATg                                                                                                           <  2:46987/143‑1 (MQ=255)                                         tGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGACGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCCACAGCGCCGGATgcg                                                                                                         >  1:476182/1‑143 (MQ=255)                                           gCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTTCGGCACTAGAGTTAGGCAACAGCGCCGGATggggc                                                                                                       >  1:370633/1‑143 (MQ=255)                                           gCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTCGGCATCGGTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTCTTGCGGACGTGGAGGTTGGCAAAAGCGGCGGATgcggc                                                                                                       >  1:424208/1‑143 (MQ=14)                                                       gacggggggcgcgcGGCTTATCCGGCCTACGGTTGGGCATCGTTTGCGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTa                                                                                           <  1:618951/135‑1 (MQ=14)                                                          gcggcgCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGCTGCGCAAGCATCGCATCCGACATGACTGCGGCACTGGAGTTTGGCGACCGCGGCGGCAGCGGCCCGAGCGccgagccg                                                                                        >  2:590835/1‑137 (MQ=14)                                                                        ttagctgggcTACGGTGGGGCATCGTCTGAGTCAGTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa                                                                         <  1:847815/134‑1 (MQ=14)                                                                        ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑GCGTTTTaa                                                                         >  1:774017/1‑143 (MQ=255)                                                                        ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa                                                                         >  1:1075328/1‑143 (MQ=255)                                                                             cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCC‑ACGGTTTAATGccc                                                                    >  1:391541/1‑142 (MQ=255)                                                                              ggCCTACGGTTGGGCATCGTTTGAGTCACTGTCGGTCGTATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAg                                                                   <  1:846841/143‑1 (MQ=255)                                                                                   aCGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑CCGTTTTGATGCCAGCaaga                                                              >  2:87410/1‑141 (MQ=255)                                                                                     ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAGACGGCGCGAGCGACCTATCCGGACT‑AACTTTTAATGCCAGCAAAAAt                                                            >  2:1065457/1‑143 (MQ=17)                                                                                        gcggCACCGTTACAGTCACTGTCGGGCCGATGCGATGCGCAAGGAGCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGt                                                         <  2:529976/141‑1 (MQ=17)                                                                                           gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCCGCAGCAATGGTGaa                                                      >  1:259661/1‑143 (MQ=255)                                                                                           gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAACAATGGTGaa                                                      >  2:1016104/1‑143 (MQ=255)                                                                                              tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATggggcaatg                                                   >  2:264341/1‑136 (MQ=255)                                                                                                gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAcc                                                 <  1:264341/143‑1 (MQ=255)                                                                                                gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACATTTTAATGCAAGCAAAAATGATGAATTaac                                                 >  1:683772/1‑141 (MQ=255)                                                                                                 tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTCATCCGGCCT‑ACGTTTCAATCCCAGCAAACCTGGCGAACTAccc                                                >  2:569609/1‑142 (MQ=17)                                                                                                 tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAGAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAGAAATGGTGAAGTAcat                                                >  1:152186/1‑141 (MQ=255)                                                                                                      gTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGtt                                           >  1:162263/1‑143 (MQ=255)                                                                                                          cTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACattatt                                                                                                                                           <  1:262255/44‑1 (MQ=255)                                                                                                           tGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGCCAACAGCGCCGGATGCGCCGCGAGCGCCTTATCCGGCCC‑ACGTCTTAATGCCAGCAACAACGGTCAATCACCTgccgacgcac                                      >  2:854553/1‑134 (MQ=17)                                                                                                                gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                 >  1:436436/1‑143 (MQ=255)                                                                                                                gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc                                 >  2:506844/1‑143 (MQ=255)                                                                                                                gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGAGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTAcgc                                 >  2:182700/1‑143 (MQ=255)                                                                                                                 tCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg                                >  1:780225/1‑143 (MQ=255)                                                                                                                   ggctAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTGTTAATGCCAGCAAAAATGGTGAATTACGTGGGTTCTCAgcatccggg                              >  2:1047593/4‑135 (MQ=18)                                                                                                                    gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTCATCAGCTCGCGGGt                             >  1:6102/1‑143 (MQ=255)                                                                                                                    gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGCGAATTACCTGGGTTATCAGGTCGCGGGt                             >  2:339198/1‑143 (MQ=255)                                                                                                                       aaGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTAT‑TGACTTAACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTggg                          >  1:249329/1‑143 (MQ=21)                                                                                                                         gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCt                        >  2:353630/1‑143 (MQ=255)                                                                                                                             tcgtaGCATCGCAGCCGACAGTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt                    <  1:1073394/139‑1 (MQ=255)                                                                                                                              gcAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGcc                                                                                                                <  1:121168/51‑1 (MQ=255)                                                                                                                                 agtatcgcatcCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                <  2:413994/140‑1 (MQ=255)                                                                                                                                 aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc                <  1:964895/143‑1 (MQ=255)                                                                                                                                    atcgcatcCGACGTTAGTGCGGCACTGGAGTTTGGCAACAGCGCACGATGCTGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt             <  2:432736/143‑1 (MQ=37)                                                                                                                                    agcgcatcCGACGTTAGGGCGGCACTGGAGGTTGGCAACAGCGCCGGACGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt             <  2:433289/141‑1 (MQ=37)                                                                                                                                     tcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg            <  1:506844/143‑1 (MQ=255)                                                                                                                                            cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAAATCGGTTATCTTGTCGCTGGTGGGCTTGATAAACCGTGTTTCCAg     <  1:749688/143‑1 (MQ=25)                                                                                                                                            cGACATGATTGCGGCACGGCAGTTTGGCAACAGCGTCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTAAATGACAGAAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg     <  2:87600/143‑1 (MQ=37)                                                                                                                                             gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGa    >  1:980131/1‑143 (MQ=255)                                                                                                                                               cATTAGAGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata  <  2:299226/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                GCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATA  >  NC_000913/4153485‑4153769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.