New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 805897 = | 75 (1.200) | 4 (0.080) +CTACAGTGACTCAAACGATGCCCAAC |
4/230 | 7.6 | 6.1% | noncoding (94/178 nt) | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences |
? | NC_000913 | = 4153692 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT > NC_000913/4153556‑4153834 | ttagctgggcTACGGTGGGGCATCGTCTGAGTCAGTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa < 1:847815/134‑1 (MQ=14) ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑GCGTTTTaa > 1:774017/1‑143 (MQ=255) ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTaa > 1:1075328/1‑143 (MQ=255) cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCC‑ACGGTTTAATGccc > 1:391541/1‑142 (MQ=255) ggCCTACGGTTGGGCATCGTTTGAGTCACTGTCGGTCGTATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAg < 1:846841/143‑1 (MQ=255) aCGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑CCGTTTTGATGCCAGCaaga > 2:87410/1‑141 (MQ=255) ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAGACGGCGCGAGCGACCTATCCGGACT‑AACTTTTAATGCCAGCAAAAAt > 2:1065457/1‑143 (MQ=17) gcggCACCGTTACAGTCACTGTCGGGCCGATGCGATGCGCAAGGAGCGCAGCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGt < 2:529976/141‑1 (MQ=17) gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCCGCAGCAATGGTGaa > 1:259661/1‑143 (MQ=255) gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAACAATGGTGaa > 2:1016104/1‑143 (MQ=255) tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATggggcaatg > 2:264341/1‑136 (MQ=255) gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAcc < 1:264341/143‑1 (MQ=255) gTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACATTTTAATGCAAGCAAAAATGATGAATTaac > 1:683772/1‑141 (MQ=255) tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTCATCCGGCCT‑ACGTTTCAATCCCAGCAAACCTGGCGAACTAccc > 2:569609/1‑142 (MQ=17) tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAGAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAGAAATGGTGAAGTAcat > 1:152186/1‑141 (MQ=255) gTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGtt > 1:162263/1‑143 (MQ=255) tGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGCCAACAGCGCCGGATGCGCCGCGAGCGCCTTATCCGGCCC‑ACGTCTTAATGCCAGCAACAACGGTCAATCACCTgccgacgcac > 2:854553/1‑134 (MQ=17) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc > 2:506844/1‑143 (MQ=255) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgc > 1:436436/1‑143 (MQ=255) gTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGAGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTAcgc > 2:182700/1‑143 (MQ=255) tCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcgcg > 1:780225/1‑143 (MQ=255) ggctAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTGTTAATGCCAGCAAAAATGGTGAATTACGTGGGTTCTCAgcatccggg > 2:1047593/4‑135 (MQ=18) gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTCATCAGCTCGCGGGt > 1:6102/1‑143 (MQ=255) gATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGCGAATTACCTGGGTTATCAGGTCGCGGGt > 2:339198/1‑143 (MQ=255) aaGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTAT‑TGACTTAACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTggg > 1:249329/1‑143 (MQ=21) gATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCt > 2:353630/1‑143 (MQ=255) tcgtaGCATCGCAGCCGACAGTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGAt < 1:1073394/139‑1 (MQ=255) agtatcgcatcCGACATTATTGCGGCACTGGAGTGTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc < 2:413994/140‑1 (MQ=255) aGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAAc < 1:964895/143‑1 (MQ=255) atcgcatcCGACGTTAGTGCGGCACTGGAGTTTGGCAACAGCGCACGATGCTGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGACAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt < 2:432736/143‑1 (MQ=37) agcgcatcCGACGTTAGGGCGGCACTGGAGGTTGGCAACAGCGCCGGACGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt < 2:433289/141‑1 (MQ=37) tcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgtg < 1:506844/143‑1 (MQ=255) cGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTAAATCGGTTATCTTGTCGCTGGTGGGCTTGATAAACCGTGTTTCCAg < 1:749688/143‑1 (MQ=25) cGACATGATTGCGGCACGGCAGTTTGGCAACAGCGTCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTAAATGACAGAAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg < 2:87600/143‑1 (MQ=37) gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGa > 1:980131/1‑143 (MQ=255) cATTAGAGCGGCACTGGCGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGata < 2:299226/143‑1 (MQ=255) tagtGCGGCACTGGAGTTTGGCATCAGCGGCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtc < 2:181197/140‑1 (MQ=255) aCTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCCTCAGGTtg > 2:913251/1‑143 (MQ=255) cTGGAGGTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCGAAAATGGTGAATTACCTTGGTTATCAGTTCGCGGGTGGGCTTGATAAACGGCGGTTCCACCGATTAATCAGGCtga > 2:676073/1‑143 (MQ=25) tGGAGTTTGGCAAGAGCGCCGGATGGGGCGCGAGCGCTTTATCCGGCCT‑ACGTTTTAATGTCAGCAAAAACTGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTtgat < 2:885923/143‑1 (MQ=255) aGTTTGGCAACAGCGCCGGATGCGGCGCGAGAGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATATACCGTGTTTCCAGATATTCTTCAGGTTGATGAg > 1:27160/1‑143 (MQ=255) gTTTGGCAACAGCGCCGGAGGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGc < 1:346014/143‑1 (MQ=255) tttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGCTGATGAGca > 2:315101/1‑142 (MQ=255) tggtcgtgtgcgcCGGATGCGGCGCGAGCGCCTTGTCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCt < 2:370633/134‑1 (MQ=255) ggCAACAGCGCCGGAAGCGACGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGa < 1:496978/143‑1 (MQ=255) gCAAGAGCGCCGGATGCGGCGCGAGCGCCGTATCCGGCCT‑ACGTTTGAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAt < 1:437625/143‑1 (MQ=255) cAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGCtt > 1:436206/1‑143 (MQ=255) aacgtaggcCGGATAAGGCGCTCGCGCCGCATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAACTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGCTTCCAGATCTTCATCAGACTGATGGGcacgagt > 2:568193/8‑137 (MQ=21) aCAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGAttca > 1:380463/1‑141 (MQ=255) gcgcCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTg < 1:353630/143‑1 (MQ=255) cgcCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCCGATATTCATCAGGTTGATGAGCCTGGTTAATTGa > 2:752481/1‑143 (MQ=255) gcggtgCGAGCGCCTTATCCGGCCT‑AGGTTTTATTGCCAGCAAAAATGGTGAATGTCCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcc < 2:72185/143‑1 (MQ=255) ggcgCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGCTAAACCGTGTTCCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGcccc > 1:288285/1‑143 (MQ=255) cgcgAGCGCGTTATCGGGGCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCaa < 2:963849/143‑1 (MQ=255) tATCCGGCCT‑ACGTTTTAAGGCCAGCAAAACTGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCg < 2:54809/143‑1 (MQ=255) aTCCGGGCT‑GCGTTTTAATGCCAGCAAAAGTGGTGGATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCgg < 1:854553/143‑1 (MQ=255) ccGGCCT‑ACTTTTTAATGCCAGCAAAAATGGTGCATTACCTGCGTTACCAGTTCGCGGGTGGGCTTGATAACCCGTGTTTCCAGCTATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGc < 1:149821/143‑1 (MQ=255) aCGTTTTAATGCCAGCGAAAATGGTGAATTACCTGGGGTATCAGTTCGCGGGGGGGCTGGATAAACCGTGTTTCCAGATATTAATCAGGTGGATGAGCCTCATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCGTAGCGt > 2:753096/1‑143 (MQ=255) aCGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGt > 2:814767/1‑143 (MQ=255) gTTTTAAGGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGttt < 2:185722/143‑1 (MQ=255) | TTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCT‑ACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTT > NC_000913/4153556‑4153834 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |