New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946687	61 (0.980)	9 (0.150)	5/270	8.0	13.4%	intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
	?	NC_000913	= 4171600	NA (NA)					intergenic (+57/‑36)	rrlB/rrfB	23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171467‑4171709                                                                                                                                      |                                                                                                              aaccatactaagCCGGGCGCGAAAGCGCAGCGATGCGCTGAGCTAACCGGCACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACg                                                                                                      <  1:2188/132‑1 (MQ=1)                ggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGcttctgcgttctgat                                                                                       <  1:999324/143‑15 (MQ=1)                            cagggttGCCTTGAGCTAACCGGGACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAttt                                                                           <  2:860377/137‑1 (MQ=0)                                       tGAGTTAACCGGTACTAATGAACCGTCAGCGCTAATCTTACAACCCTGTAGCTGTTTTGCCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa                                                                <  2:10304/143‑1 (MQ=11)                                          gCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTa                                                             <  1:336155/143‑1 (MQ=32)                                          gCTAACCGGTACTAATGAACCGTGAGGCTTAACCATACAACGCCGAAACTGTTTTGGCGGATGAGAGAAGATTTTCAGCGTGATACAGATTAAATCAGAACGTAGGAGCGGGCTGATAAAACAGAATTTGCCTGGCGGCAGTa                                                             >  1:148885/1‑143 (MQ=11)                                           cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAg                                                            <  1:150436/143‑1 (MQ=32)                                           cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAg                                                            >  1:729906/1‑143 (MQ=32)                                           cTAACCGGTACTAATGAACCATGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAg                                                            >  1:303930/1‑143 (MQ=17)                                              aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGAGGCAGTAgcgc                                                         >  2:850077/1‑143 (MQ=17)                                              aCCGGTACTAATGAACCGTGAGGCTTAACCTGACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc                                                         >  1:598837/1‑143 (MQ=17)                                              aCCGGGACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc                                                         >  1:361334/1‑143 (MQ=17)                                                cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGACGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCGGCCTGATAGAGATTAAATCAGAACGCAGCAGCGGTCTGATAGAACAGAATCTGCATGCCGGCAGTAGagcga                                                       >  2:261011/1‑142 (MQ=11)                                                 ggTACTAATGAAGCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt                                                      <  1:271237/143‑1 (MQ=17)                                                  gTACTAATGAACCGTGAGGCCTAAGCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg                                                     <  2:937467/143‑1 (MQ=17)                                                     cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTGGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                  <  1:780115/143‑1 (MQ=17)                                                         tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc                                              >  1:881670/1‑143 (MQ=32)                                                           aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            <  1:68063/143‑1 (MQ=32)                                                           aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            <  1:864161/143‑1 (MQ=32)                                                              cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAc                                         >  2:87940/1‑143 (MQ=32)                                                              cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGAGGCAGCACCGCGGTGGTCCCACCTGaa                                         >  2:488678/1‑142 (MQ=255)                                                               gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAcc                                        >  1:1024569/1‑143 (MQ=32)                                                               ccgttgCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCCGTGGTCACAGCtaagc                                        >  2:937744/6‑139 (MQ=1)                                                                     cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc                                  <  1:634793/143‑1 (MQ=32)                                                                      ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGAGCTGGACCCACCAGACCCCATGcc                                 >  2:708001/1‑143 (MQ=255)                                                                        aaCCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAtcgcga                               >  1:96578/1‑138 (MQ=12)                                                                         aCCTTACAACGCCGAAGCTGATTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAATTGCCTGGCGGCAGTAGCGCGCTGGTCCCACCTGAACCCATCCCGac                              >  2:33168/1‑142 (MQ=11)                                                                           cTTACCACGCCGCAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGCATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt                            <  2:1087830/143‑1 (MQ=12)                                                                           cTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt                            >  2:304021/1‑143 (MQ=32)                                                                            ttACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                           <  1:566701/143‑1 (MQ=32)                                                                             tACAACGCCGACGCTGTTTGGGCGGATGAGAGACGAGTTTCAGCCTGATACAGATTGAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATCTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCa                          <  2:582002/143‑1 (MQ=11)                                                                             tACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGGCGACCTcc                          >  1:239347/1‑142 (MQ=17)                                                                                cgacctgAAGCGGTTGTGGGGGATGAGAGGAGCGTTTCAGCCTGATAGCGATTAATTCAGGGCGCAGGTGCGGTCGGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:396291/137‑1 (MQ=11)                                                                                aaCTCCGTAGCTGTTTTTGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAATCAGCATTTGCCTGGCGGCAGTAGCGCGGTGGTTCCACCTGACCCCATGCCGAACTCAGaa                       <  2:826752/143‑1 (MQ=11)                                                                                aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:193231/143‑1 (MQ=32)                                                                                aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       >  2:1024738/1‑143 (MQ=32)                                                                                 aCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGAGTAAATCAGAACGCAGAAGGGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGACCCACCTGACCCCATGCCGAACGCAGAAg                      >  2:136211/1‑143 (MQ=255)                                                                                       aaGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAGAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc                <  2:616369/143‑1 (MQ=17)                                                                                           tGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGCAGTGAAACGCCg            >  2:677844/1‑143 (MQ=17)                                                                                           tGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGAAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGACGTGCAACGcag            >  2:181327/1‑141 (MQ=255)                                                                                             ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa          >  1:959760/1‑143 (MQ=32)                                                                                             ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa          >  2:844629/1‑143 (MQ=32)                                                                                              tttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAg         >  2:301085/1‑143 (MQ=32)                                                                                               ttGGCGGATGAGAGAAGATTTTCAGACGGATAAAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc        >  1:512861/1‑143 (MQ=12)                                                                                               gtGGCGGATGAGAGAAGATGGGCGGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc        <  1:184283/142‑1 (MQ=11)                                                                                                 ggCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc      <  1:936904/143‑1 (MQ=32)                                                                                                  gCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGGGCGGCGGACCCACCTGACCCCATGCCGCACTCAGAAGTGAAACGCCGTAGCGcc     >  2:228794/1‑143 (MQ=255)                                                                                                  gCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc     >  2:461845/1‑143 (MQ=32)                                                                                                   cGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGGACTCAGAAGTGAACCGCCGTAGCGCCg    >  1:354858/1‑143 (MQ=17)                                                                                                     gATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt  >  1:31907/1‑143 (MQ=31)                                                                                                                                      |                                                                                                              GACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171467‑4171709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.