Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	97 [0]	[0] 97	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	90 (1.290)	67/266	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642                                                                                                                                          |                                                                                                                                             cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                         <  2:329528‑M1/143‑6 (MQ=255)    tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc                                                                                                                                      >  1:474772‑M1/1‑135 (MQ=255)       acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaata                                                                                                                                   >  2:952448‑M1/1‑132 (MQ=255)            tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTAACATAAAAGtataaatcatacttct                                                                                                                              >  1:522123‑M1/1‑127 (MQ=255)             cTAAGATTTCTCCCAAACCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGAGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                             <  1:813219‑M1/143‑18 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAAAGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcagacgtttgt                                                                                                                            >  1:444108‑M1/1‑125 (MQ=255)               aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatgagtcgtacttttgtt                                                                                                                           >  2:151994‑M1/1‑124 (MQ=255)                   tttttCCTAAATCGACGCAACTGTACTCGTCACTACAGGCACATACAACGGAGGGTGGATGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  2:1081049‑M1/143‑24 (MQ=255)                   tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  2:526041‑M1/143‑24 (MQ=255)                   tatgtcctaAATCGACGCAGCTGTACTCGTAACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  1:1186662‑M1/139‑24 (MQ=255)                    ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtgatacttttgttttggg                                                                                                                      >  2:1177612‑M1/1‑119 (MQ=255)                     tttCCTAAAGCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtattattcatacttttgttttgggt                                                                                                                     <  1:159745‑M1/143‑26 (MQ=255)                       tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCACTAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtgtaagtcatacttttgttttgggtgt                                                                                                                   >  2:191159‑M1/1‑116 (MQ=255)                       tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgagtgt                                                                                                                   >  2:1064375‑M1/1‑116 (MQ=255)                         cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttgctgtac                                                                                                                 >  1:951356‑M1/1‑114 (MQ=255)                            aaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                              >  1:1041517‑M1/1‑111 (MQ=255)                             aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtgctacttttgttttgggtgtatttca                                                                                                             >  2:1181020‑M1/1‑110 (MQ=255)                                 aggcaggtgtactcgTCACTATACGCACAGACAACTGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                         <  1:806876‑M1/136‑38 (MQ=255)                                 aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATGATTGtataagtcatacttttggtttgggtgtatttcaatct                                                                                                         <  2:298323‑M1/143‑38 (MQ=255)                                   gtgactgTCCTCGTCACTTCACGCACATACAACGTACGGGTGCTGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATTtataattcatacttttgttttgggtgtatttcaatctgt                                                                                                       <  1:350582‑M1/140‑40 (MQ=255)                                   gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                       >  1:974794‑M1/1‑104 (MQ=255)                                   gCAACTGTACTCGACACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                       <  2:636969‑M1/143‑40 (MQ=255)                                    cAACTGTACTCGTGACTACACGCACATACGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                      <  1:869117‑M1/143‑41 (MQ=255)                                     aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                     <  1:355972‑M1/143‑42 (MQ=255)                                       cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                   >  1:846498‑M1/1‑100 (MQ=255)                                        tgtgCTCTTCTCTACACGCAGTTGCAGCGGATGTGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCATTTATTTAACATTAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                  <  1:334104‑M1/143‑45 (MQ=255)                                          tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                <  2:200289‑M1/143‑47 (MQ=255)                                            cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                                                              >  2:653501‑M1/1‑95 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatcttttaaaaagttt                                                                                             >  2:662027‑M1/1‑94 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttctgttttgggtgtatttcaatctctcaacacgctt                                                                                             >  2:747791‑M1/1‑94 (MQ=255)                                             tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaatcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  1:822288‑M1/1‑94 (MQ=255)                                              cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                            >  2:82594‑M1/1‑93 (MQ=255)                                               gTCACTACACGTACATACTACGGAGGGGGGCTGCGATTTTCAATTGTGCATGATGCAGATCACACAAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                           <  2:1007837‑M1/143‑52 (MQ=255)                                                tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttatatagtttttc                                                                                          >  2:288530‑M1/1‑91 (MQ=255)                                                 cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                         <  1:531363‑M1/143‑54 (MQ=255)                                                 cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatatggtaaaaagtttttcg                                                                                         >  1:48659‑M1/1‑90 (MQ=255)                                                    tACACGCACATACAACGGAAGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCACTTACTTCACATAAATGtataagtcatactttttatttgagcgtattttaatctgttataaaatttttaactc                                                                                      >  1:39643‑M1/1‑87 (MQ=255)                                                     acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                     >  2:335900‑M1/1‑86 (MQ=255)                                                      cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                    <  2:1024339‑M1/143‑59 (MQ=255)                                                       acGCACATACAACGGAGGGGGGCGGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                   <  2:439450‑M1/143‑60 (MQ=255)                                                         gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 <  2:952432‑M1/143‑62 (MQ=255)                                                         gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 <  2:838136‑M1/143‑62 (MQ=255)                                                         gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagattatcactaagata                                                                                 >  2:634421‑M1/1‑82 (MQ=255)                                                           acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                               >  2:1240224‑M1/1‑80 (MQ=255)                                                             aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                             >  2:477991‑M1/1‑78 (MQ=255)                                                               aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                           >  2:84925‑M1/1‑76 (MQ=255)                                                                 aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtatttcgctacgctagcaagcaa                                                                         >  2:392622‑M1/1‑74 (MQ=255)                                                                  aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgttacaaagtttttcgctacgctagcaagcaaa                                                                        >  2:648101‑M1/1‑73 (MQ=255)                                                                    tgaGGGATGCTGCTATTTTCAATAAAGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                      <  2:37104‑M1/142‑73 (MQ=255)                                                                        ggtgtcttcgattttcaATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                  <  2:10207‑M1/135‑77 (MQ=255)                                                                          gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAATTGtataagtcatacttttgatttgggtgtatttcaatatgttaaaaagtttttcgctacgctagcaagcaaaaaagaaac                                                                >  1:626544‑M1/1‑65 (MQ=255)                                                                          gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                >  2:764127‑M1/1‑65 (MQ=255)                                                                          gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                >  2:560773‑M1/1‑65 (MQ=255)                                                                           ggCTGCGATTTTCAAGAACGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                               <  2:458798‑M1/143‑80 (MQ=255)                                                                             cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAGATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                             >  1:638784‑M1/1‑62 (MQ=255)                                                                              tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                            >  1:1013425‑M1/1‑61 (MQ=255)                                                                              tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgccagcaagcaatcgcgaaaccgta                                                            >  1:603774‑M1/1‑61 (MQ=255)                                                                                  aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATAACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                        >  2:154133‑M1/1‑57 (MQ=255)                                                                                   ttttCAATAAGGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttggttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                       <  1:1125067‑M1/143‑88 (MQ=255)                                                                                      tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggcataatcga                                                    >  1:553960‑M1/1‑53 (MQ=255)                                                                                        aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                  <  2:814735‑M1/143‑93 (MQ=255)                                                                                         ataatTAGTGATGCAGATCACACAAAAGAGTGGATTATTTAACATAATTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                 <  1:12298‑M1/143‑94 (MQ=255)                                                                                         ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                 >  2:457425‑M1/1‑50 (MQ=255)                                                                                         ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatgtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaagaggcatactcgcccc                                                 >  2:164336‑M1/1‑50 (MQ=255)                                                                                             tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                             >  1:936972‑M1/1‑46 (MQ=255)                                                                                                  gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttg                                        <  1:708419‑M1/143‑103 (MQ=255)                                                                                                   aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  1:82594‑M1/143‑104 (MQ=255)                                                                                                   aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  2:696599‑M1/143‑104 (MQ=255)                                                                                                   aTGCAGATCACACAAAACACTCAATTACTTAACAGAAAGGtataagtcatacttttgttttgggtgtatttcaatctgtttaaaagcttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  2:540766‑M1/143‑104 (MQ=255)                                                                                                           cacacaAAACACTCAATTACTTAACATAAATGtataagtcatgttaatgtcgtaagagaatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                               <  2:1224566‑M1/143‑112 (MQ=255)                                                                                                            acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                              <  2:974794‑M1/143‑113 (MQ=255)                                                                                                              acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  2:689925‑M1/1‑29 (MQ=255)                                                                                                              acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  2:691914‑M1/1‑29 (MQ=255)                                                                                                              acaAAACACTCAATTACTTAACATAAATGtataagtcatactatagttttgggtgtatttcaatctgttaaaaagtttttcgctacgctaacaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  1:747027‑M1/1‑29 (MQ=255)                                                                                                               caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                           >  2:831793‑M1/1‑28 (MQ=255)                                                                                                                aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttggttgtatttcaatctgttaaaaagtttttcgctacgctagcaggcaaaaatgcaacaggaataattgaaaggggttgttgcgatcactgaaaat                          >  1:720987‑M1/1‑27 (MQ=255)                                                                                                                aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaagat                          >  2:385551‑M1/1‑27 (MQ=255)                                                                                                                aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                          >  2:1220503‑M1/1‑27 (MQ=255)                                                                                                                   acacTCAATTACTTAACATAAATGtataagtcatgcttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaagaatgaaacaggaataatcgaaatgggatgttgcgcacagtaacaatgac                       >  2:842138‑M1/1‑24 (MQ=255)                                                                                                                   acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtccaaataac                       >  2:261131‑M1/1‑24 (MQ=255)                                                                                                                   acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgaacagtcaaaataac                       >  1:802867‑M1/1‑24 (MQ=255)                                                                                                                     acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcgagcaaaaatgaaacaggaatactctaaatgggatgttgcgcacagtcaaaataactc                     >  2:774281‑M1/1‑22 (MQ=255)                                                                                                                      cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                    <  2:1041517‑M1/143‑123 (MQ=255)                                                                                                                       tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  2:989715‑M1/1‑20 (MQ=255)                                                                                                                       tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  2:148967‑M1/1‑20 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                 >  2:127879‑M1/1‑18 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtatatttaaatctgttaaaaagtttctcggtacgctagcaagcaaaaatgaaacagtaataatcgaaatggcatgtttgtcaaagtcaacataacgtaacg                 >  1:1220708‑M1/1‑18 (MQ=255)                                                                                                                              cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat            >  2:1125411‑M1/1‑13 (MQ=255)                                                                                                                              cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat            >  2:307279‑M1/1‑13 (MQ=255)                                                                                                                                tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa          <  2:921174‑M1/143‑133 (MQ=255)                                                                                                                                   cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca       >  2:157387‑M1/1‑8 (MQ=255)                                                                                                                                   cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataataa       >  2:317407‑M1/1‑8 (MQ=255)                                                                                                                                    aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat      >  1:195683‑M1/1‑7 (MQ=255)                                                                                                                                     tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc     <  1:1206535‑M1/143‑138 (MQ=255)                                                                                                                                      aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  2:1101613‑M1/1‑5 (MQ=255)                                                                                                                                      aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             <  1:1101613‑M1/54‑50 (MQ=255)                                                                                                                                        aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgcaacaggaataatcgaaatgggatgttgcgcacagtcaaactaactcaccgtaaataatactgtgc  >  1:762202‑M1/1‑3 (MQ=255)                                                                                                                                          |                                                                                                                                             CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑