New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	58 (0.860)	14 (0.240)	14/252	4.3	19.9%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	61 (1.020)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927                                                                                                                                             |                                                                                                                                          ggtggCGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGCCACTGTGCAAACGGCTCTCGAAAACCTTg                                                                                                                                         <  2:35993/143‑1 (MQ=255) gggggAGGCTTCCGGTGCCAGCATGGAGTAGCGGCGGCTGGAGCAGTTGCGTACCGCCCTTCGCGCGCGGCTGTGACGCCGCAAGAATCCTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTg                                                                                                                                         <  1:1026558/140‑1 (MQ=255)  gtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTgg                                                                                                                                        >  2:929665/1‑143 (MQ=255)       ggCATCCTGGTCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTGAGGTCGGTAGCGTCCGTTTGTCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:247422/143‑1 (MQ=18)       ggCATCCGGTGCCAGCCTGGAGAAGGGGCTGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCCAACGGCTCGCGCACACCTCggcgtgg                                                                                                                                   >  2:642843/1‑138 (MQ=17)       ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:952168/143‑1 (MQ=255)       ggCATCCCGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  2:390874/143‑1 (MQ=255)        gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                  >  1:489313/1‑143 (MQ=255)            gaggTGCCAGCCTGCAGAAGGGGCGGCACGACCAGTTACTTACCGCACTCCGCGCGCTGCTGTTAAGCCGCCAGGATCCGTTTGGCGATATCAAATCCGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  1:55006/141‑1 (MQ=17)            ccGGGGCCGGCCGGGAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  1:32616/143‑1 (MQ=255)                      cccggAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    <  2:594176/140‑1 (MQ=255)                      ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    >  2:627675/1‑143 (MQ=255)                          gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTaaa                                                                                                                >  2:496923/1‑143 (MQ=255)                           agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                               <  2:273422/143‑1 (MQ=255)                            gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                              <  2:807193/143‑1 (MQ=255)                              aGGGGCGGCACGACCAGTTACTGACCGCGCTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                            <  1:361848/143‑1 (MQ=255)                               ggggCGGCACGAGGAGGTACTGACCGCACGTCGCGCGGTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                           <  2:138070/143‑1 (MQ=21)                                gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAACTCAATgcagc                                                                                                          >  1:378190/1‑143 (MQ=255)                                  gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        >  2:610614/1‑143 (MQ=255)                                  gcggcACGACCAGTGACTTACCGCACTCAGCACGATGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        <  2:590855/143‑1 (MQ=21)                                               ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTGTGGGAGACGGAACCAAACTCAATGCAGCGACGGCTACAGTAgg                                                                                           >  1:1122969/1‑143 (MQ=21)                                                tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAAAAGCTACATTAGGa                                                                                          >  2:208329/1‑143 (MQ=255)                                                    tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCGGCCACGGCTACATGAGGACGCa                                                                                      >  1:329651/1‑143 (MQ=255)                                                     acCGCACTTGGAGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                     <  1:445040/143‑1 (MQ=25)                                                        gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTTAATACAGAAACGGCTACATGAGGaaggagcgg                                                                                  >  1:995294/1‑135 (MQ=18)                                                              cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                            <  2:299051/143‑1 (MQ=255)                                                                 gcgcTGCTGTTCAGCCGCAAGAGTCCGTGTGGCGAGGTCAAGTCGGATGGCACTGTGTGGTCGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                         <  1:1008945/143‑1 (MQ=25)                                                                     tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                     >  1:38492/1‑143 (MQ=255)                                                                     tgctgTTAAGCCGCAAGAATCCGTTTAGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGGCGCACCGGTTTCACAGCtatg                                                                     >  1:39640/1‑142 (MQ=255)                                                                        tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                  <  2:489313/143‑1 (MQ=255)                                                                         gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCGACGGCTACATTAGGACGCACCGGATTCATAGCTATACCgg                                                                 >  2:47333/1‑143 (MQ=255)                                                                           tgaGCCGCAGGAATCCGTGTGCCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                               <  2:484010/141‑1 (MQ=255)                                                                                  cAAGAATCCGTTTGGCGATATCGAATCGGATGGAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCAACGGCTTTATTTGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                        <  1:1015335/143‑1 (MQ=37)                                                                                     gagtctgTTGGGCGATATCAAATCGGTTGGCACTGTGCAAACTGCTCTCGAACACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                     <  1:1082274/137‑1 (MQ=255)                                                                                     gAATCCGTTGGGCGCTACCCAATCGGATGGCACTCCGCAAACCGCTCTCGCAAACCTTGGCTTGCGAGACGGAGCCACCCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAGCTATACCGGTTATGATtggtg                                                     <  2:984007/143‑1 (MQ=255)                                                                                        tCCGTTTGGCGATACCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                  <  2:100401/143‑1 (MQ=255)                                                                                            tttGGCGGTATGAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAAGGCGGCGACGGCTACATTAGGGCGCACCGGTGTCATAGCGATACCGGTTATGATTGGTGGTATTGa                                              <  1:642843/143‑1 (MQ=37)                                                                                            tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTAACATTGCTGGTACTGa                                              >  1:805943/1‑143 (MQ=38)                                                                                            tttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  2:244524/143‑1 (MQ=255)                                                                                            ttgggCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  2:696227/140‑1 (MQ=255)                                                                                                  gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTGGTGGTATTGAGCAATc                                        >  2:999340/1‑143 (MQ=255)                                                                                                   atatCAAATCGGACGCCACTGTGCAAGCGGCCCCCGAAACCCTCGGTGTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                       <  2:308894/143‑1 (MQ=255)                                                                                                    tatCAAAGCGGGTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATccg                                      <  1:778907/143‑3 (MQ=255)                                                                                                     atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                     >  1:286346/1‑143 (MQ=255)                                                                                                        aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAAt                                  >  1:135298/1‑143 (MQ=255)                                                                                                          aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAACCCGTAATCa                                >  1:663312/1‑143 (MQ=255)                                                                                                                tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt                          >  1:918577/1‑143 (MQ=255)                                                                                                                tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGTGGTATTGAGCAATAAGTAATCATTCAGt                          >  1:918586/1‑143 (MQ=255)                                                                                                                   cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCCATACCGGGTATGATTGGTGGTATGGAGCGATCAGTAATCATTCAGTggg                       >  2:158611/1‑143 (MQ=255)                                                                                                                         gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTGGGGGTGGa                 <  1:1018492/143‑1 (MQ=255)                                                                                                                          cAAACGGCCCGCGAAAACCTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                <  2:817166/143‑1 (MQ=255)                                                                                                                             aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGCGTTGAGCAACCCGCAATCCGTCCGCGGGGGGGGAAAGc             >  1:92568/1‑143 (MQ=255)                                                                                                                               ggCTCTCGCAACCCTGGGTTTGGCAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTGTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  2:110128/143‑1 (MQ=255)                                                                                                                               ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  2:360150/143‑1 (MQ=255)                                                                                                                                 ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTACTGAGCAATCAGTAATCATGCAGTGGGGGTCGAAAGCCGcc         >  1:87869/1‑142 (MQ=255)                                                                                                                                  tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCCTTCAGTGGGGGTGGAATGCCGcca        >  1:655560/1‑141 (MQ=255)                                                                                                                                    tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGAAGGAACTGGGCGATCAGTAATCATGCAGTGGGGGTGGAATGCCGCaaaa      >  1:402546/1‑143 (MQ=255)                                                                                                                                     cGAAAAGCTGGGGTGGGGAGAAGGGGCAAAACTGAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg     <  2:745498/143‑1 (MQ=255)                                                                                                                                        aaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  >  2:121466/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                          GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.