| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,951,734 | Δ326 bp | pseudogene (194‑519/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3951734 | 3952059 | 326 | 45 [0] | [1] 45 | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3951733 | 0 (0.000) | 42 (0.660) | 37/268 | 0.8 | 100% | pseudogene (193/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted |
| ? | NC_000913 | 3952060 = | 0 (0.000) | pseudogene (520/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive, acetolactate synthase II, large subunit, cryptic, interrupted | |||||
CAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATC > NC_000913/3951922‑3952199 | atcccggtgacgctatctacgcgccgtcgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCa < 2:670823‑M2/5‑1 (MQ=255) tcccggtgacgctatctacgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAg < 2:196722‑M2/6‑1 (MQ=255) ggtgacgctatctacgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccgggaaGACCGGGTTg > 2:651964‑M2/134‑143 (MQ=255) gacgctatctacgcgccgttgttgttaaaacaactgtcggagcgtaaacctgcggattgcggcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAg < 1:1119247‑M2/13‑1 (MQ=255) cgctatctacgcgccgctgttgttaagccaactgtcggatcgtaaacctgcggattgcgtcgtgacgacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCg < 1:1113766‑M2/15‑1 (MQ=255) tctacgcgccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggcaaGACCAGGTTGAAGCGGCACt > 2:1045329‑M2/124‑143 (MQ=255) cgcgccgttgttgtgaaaacaactgtcggatcgtgaaacttcgtatggcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGac < 1:1126647‑M2/24‑1 (MQ=255) gccgttgttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGCCGCGGCCCTCGAcccc > 2:916779‑M2/117‑143 (MQ=255) cgttggtgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCAt < 2:462215‑M2/29‑1 (MQ=255) gttgttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggcgccgcaccagatgtgggctgcgcagcacatcgcccacactcgcccagaaaGACCAGGTTGAAGCGGCACTGCACAACATGCTg > 2:5064‑M2/111‑143 (MQ=255) ttaagacagctgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccgcactcgcccggaaaGAGCGGGTTGAAGCTGCACTCGACACCATGCTGAACa < 1:143091‑M2/37‑1 (MQ=255) ttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACa > 1:515960‑M2/107‑143 (MQ=255) ttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTCGAAGCGGCACTCGACACCATGCTGACCa > 1:364408‑M2/107‑143 (MQ=255) ttaaaacaactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGATGAAGCGGCACTCGACACCAGGCTGAACa > 1:678638‑M2/107‑143 (MQ=255) aactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATgg < 2:691240‑M2/44‑1 (MQ=255) aactgtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGAACCCATGCTGAACAGCGAggg > 1:855606‑M2/100‑143 (MQ=255) ctgtcggatcgtacacctgcggcgtgcgtcgtgaccacggatgcggggcagcactatatgtgcgctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGc < 1:668048‑M2/46‑1 (MQ=255) cggtcggaccctcaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgggggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGc < 2:35134‑M2/46‑1 (MQ=255) gtcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGGTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCa > 2:1084237‑M2/96‑143 (MQ=255) tcggatcgtaaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacctcgcccacactcgcccggacaGACCCGGTTGAAGCGGCACTCGACGCCATGCTGAACAGTGATGCGCCAt > 2:729654‑M2/95‑143 (MQ=255) cgtaaacctgcggattgcgtcgagccgacagaggtgggacctgaccatattcgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGc < 2:843183‑M2/55‑1 (MQ=255) gtaaaccgccggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCt < 2:407068‑M2/56‑1 (MQ=255) taaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCtt > 2:202144‑M2/87‑143 (MQ=255) aaacctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTc < 2:450469‑M2/58‑1 (MQ=255) aaacctgcggagtgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTc < 2:930878‑M2/58‑1 (MQ=255) ctgcggattgcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGGACAGTGATGGGCCATACCTGCTGCATGt > 2:208296‑M2/82‑143 (MQ=255) gtggcgtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAAt < 1:794296‑M2/68‑1 (MQ=255) gtcgtgaccacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATcgacg > 2:651850‑M2/71‑143 (MQ=255) accacagatgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATCCCTGCTTCATGTCTCAATCGACGACCTTg > 2:355180‑M2/65‑143 (MQ=255) gcacagctgtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGAGCAGGTTGAAGCGGAAATCGTCAGCATGCTGAACAGTGATGGGCAATACCTGCTTCATGTCTCAATCGACGAACTTga < 1:247137‑M2/80‑1 (MQ=255) agatgtggggcagcacgaggtgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAATCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAAc < 1:928809‑M2/84‑1 (MQ=255) gtggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCt > 2:1004260‑M2/56‑143 (MQ=255) ggggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTgg < 2:565813‑M2/90‑1 (MQ=255) gggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGc < 2:1142227‑M2/91‑1 (MQ=255) ggcagcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACAAGGTTGAAGCGGCACGCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCCATCGACGAACTTGAGTACGTCTGGcc > 2:22149‑M2/52‑143 (MQ=255) gcaccagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTg < 2:192270‑M2/96‑1 (MQ=255) cagatgtgggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACACTGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCCGGTgc > 1:76987‑M2/44‑143 (MQ=255) gggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGCAGCGGCACGCGACACCATGCTGCACAGTGATGGGCCATACCTGCTCCATGTCTCAATCGACGCACTCGAGAACGTCTGGCCGCtgctgccgcgtcg > 1:237988‑M2/37‑139 (MQ=255) ggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACCGCGATGGGCCATACCTGCTTCATGTCCCAATCGACGAACCTGAGCACGTCTGGCCGCTCGTGCCGCCCGgc > 1:424831‑M2/36‑143 (MQ=255) ggctgcgcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGCGATGCGCCATACCTGCTTCATGTCTCAATCGACGAACTCGAGAACGTCCGGCcgctcgtgcccgccggc > 1:35823‑M2/36‑136 (MQ=255) gcagcacatcgcccacactcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACCGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGGACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGt > 2:128305‑M2/30‑143 (MQ=255) acatcgcccaccctcgcccggaaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTc < 2:948593‑M2/119‑1 (MQ=255) cccGGAAAGACCAGGGTGAAGCGGCACTCGACACCATGCTGAACAGTGAGGGGCCATACCTGGTTCATGTCTCACTCGACGAACTTGAGGAAGACTGGCCGCTGGCGCCGACTGGGCCCAGCAAATGAGAGATGAGGGAGaaa > 1:630298/1‑143 (MQ=255) aaaGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATc < 2:515960‑M2/140‑1 (MQ=255) aaaGACCAGGTTGAACCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCTGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATc < 2:687640‑M2/140‑1 (MQ=255) | CAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATC > NC_000913/3951922‑3952199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |