New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227052	34 (0.750)	8 (0.180)	5/270	5.7	19.7%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	2727910 =	NA (NA)					noncoding (1275/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226911‑227128                                                                                                                                              |                                                                             cGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATCCTGACATGAGTCACGATAAAGCGGGTGAAAAGCACGCTc                                                                             >  1:613398/1‑143 (MQ=255)   aaGCGGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc                                                                           <  1:589553/143‑1 (MQ=38)      cTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                                        >  1:532142/1‑143 (MQ=38)       tGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAAGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATCAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGa                                                                       >  2:423888/1‑143 (MQ=255)        gCGGCAGCGATGCGTATGGTGTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTTGGGTTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTATCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                                      <  2:733102/143‑1 (MQ=11)         cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGagg                                                                     >  1:123973/1‑141 (MQ=38)           gccgCGACGCTTATGCGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                                                   <  1:461217/140‑1 (MQ=255)             aGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGCAGGTGTACTGTGAGGTATGCTGGAGGTATCAGGAGTGCGAACGCGGACATAAGTAACGATAAAGCTGGCGAAAGGCACGCTCGCCGGCAGagcc                                                                 >  2:495100/1‑140 (MQ=11)              gCGACGCTTATGCGTTGGTGGGCTGGGTAGCGTTCTTTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATACAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                                <  1:26623/143‑1 (MQ=11)               cGACGCTTAGGCGGTGTTGGGTGGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                                                               <  2:692897/143‑1 (MQ=255)                    cTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                                          <  1:819695/143‑1 (MQ=38)                      tATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                        <  1:581816/143‑1 (MQ=37)                       aTGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGGAGACCAAGGGTTGCTg                                                       >  1:354442/1‑143 (MQ=255)                        tGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGCAATACGTAACGATAAAGCGGGTGAAAAGCCCGCTCACCGGAAGAACAAGGGTTACTga                                                      >  2:495210/1‑142 (MQ=11)                          cGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGCAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                                    >  2:349279/1‑143 (MQ=25)                            ttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCGAGGGTTCCTGTCCaa                                                  >  2:526371/1‑143 (MQ=21)                             tgttgGGTAGGGGATCGTGCTGGAAGCGTGTGAAGGTGTACTGTGAGGTATGCTGTAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATATAGCGGGTGAAAAGCCCGCTCGCCGGAAGTCCAAGGGTTCCTGTCCAAc                                                 <  2:328071/143‑1 (MQ=11)                             tgtggGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                                                 <  1:477774/143‑1 (MQ=25)                                 gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa                                             >  1:115825/1‑143 (MQ=35)                                      ggggAGCGGGCGGTAAGCCTGGGAAGGTGTACTGTGAGGGATGCGGGAGGTATCAGAAGTGCGAAGGCTGACATAAGTAGCGATAGAGCGGGTGAAAAGCCCGCTGGGCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgg                                        <  2:810388/143‑1 (MQ=11)                                       gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                       >  2:302992/1‑143 (MQ=35)                                       gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGCGAGGTAGGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCGGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                       >  2:292979/1‑143 (MQ=255)                                              ttCTGTAAGCCGGTCAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt                                <  1:717754/143‑1 (MQ=21)                                                cTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa                              <  1:728733/143‑1 (MQ=35)                                                  gTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAAGGATAAAGCGGGTGAAAAGCCCGATCGCCGGAAGACCAAGGGTTACTGTCCAACGAAAAACGGTGATGGGTGatg                            >  2:439951/1‑141 (MQ=11)                                                     aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTCACGCTAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCgc                         >  1:116488/1‑142 (MQ=255)                                                     aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                         <  1:504690/143‑1 (MQ=35)                                                        ccgtgAAGGTGGACGGTGCGGTATGCTGGAGCTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCACATGCTCGTGTCCAACGTTAATCGGGGCAGTGTGAGTCGAccc                      <  2:177568/141‑1 (MQ=11)                                                        cTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc                      <  1:407465/143‑1 (MQ=35)                                                             aaGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAg                 >  1:85217/1‑143 (MQ=35)                                                                  gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCGCTACGGCGAg            >  2:736996/1‑143 (MQ=255)                                                                      tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCg        >  1:424277/1‑143 (MQ=32)                                                                          aGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAg    >  1:167806/1‑143 (MQ=32)                                                                            gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAGAGCCCGCTCGCCGGTATACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc  <  1:309271/143‑1 (MQ=9)                                                                                                                                              |                                                                             CGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226911‑227128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.