| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,023,805 | (CTTTA)2→1 | intergenic (+127/‑159) | fliR → / → rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2023796 | 2023800 | 5 | 51 [0] | [0] 53 | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2023801 = | 0 (0.000) | 47 (1.280) | 38/266 | 0.1 | 100% | intergenic (+123/‑167) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| ? | NC_000913 | = 2023795 | 0 (0.000) | intergenic (+117/‑173) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis | |||||
GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCG > NC_000913/2023661‑2023943 | ttagtgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcccctatcgcgacattt < 1:324031‑M1/3‑1 (MQ=255) gtgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcacttacatatcgcaacaTTTACt < 1:253214‑M1/6‑1 (MQ=255) tgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatgctcctgcatcgaaatatttgttttacgctcactcacatatcgcaaaaTTTGCtt < 1:273532‑M1/7‑1 (MQ=255) taaattgacattcatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACtt > 2:678298‑M1/137‑143 (MQ=255) attgtcattattatcatgctataaggtttatctggttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatagttgttttaagctcactcacatatcgcaacaTTTACTTTaa > 2:614359‑M1/134‑143 (MQ=255) attgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTaa > 1:117750‑M1/134‑143 (MQ=255) tgtcattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGa > 2:276083‑M1/132‑143 (MQ=255) ccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgtggcgaaaaatttattttaagctcactcacatatcgcaacaTTTACTTTAAGACa < 1:520830‑M1/14‑1 (MQ=255) ataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgccgcggtatctttcactcaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAgg < 1:521000‑M1/22‑1 (MQ=255) cgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATta < 1:476448‑M1/29‑1 (MQ=255) cgtaacgtttaccatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATta > 2:213929‑M1/115‑143 (MQ=255) taacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATtata > 1:459031‑M1/113‑143 (MQ=255) acgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATaca < 1:548187‑M1/33‑1 (MQ=255) ttatcgtgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatctcgcaacaTTAACTTTAAGACAATTCCAGGCAAATaatacaaaac < 2:129031‑M1/37‑4 (MQ=255) catgtaatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatctttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTa < 2:595158‑M1/41‑1 (MQ=255) atgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTAc < 2:34623‑M1/42‑1 (MQ=255) tgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACg > 1:234923‑M1/101‑143 (MQ=255) gttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACgg > 1:616993‑M1/100‑143 (MQ=255) ctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACACTGCGAGGCAGAGTATACAACACTTTACGGGATAGt < 1:297565‑M1/50‑1 (MQ=255) taaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTCCTTTAAGACAATTCCCGGCCAATTATACATCCCTTTCCCGTATAgtt < 1:189522‑M1/51‑2 (MQ=255) aaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTaa < 1:51257‑M1/52‑1 (MQ=255) ttatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatataatacccACTACATTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCg < 1:330259‑M1/57‑1 (MQ=255) cgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcacacacatatcgcaacaTTTACTTTAAGACACATCCAGGCAAATTATACAACACTTTACGGGATAGTAAGACCGCATGa < 2:35689‑M1/62‑1 (MQ=255) gaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGCTAGTACGTCCGCCTgac < 1:252464‑M1/63‑2 (MQ=255) aaaaattatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa > 2:298001‑M1/80‑143 (MQ=255) aaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa > 2:240576‑M1/80‑143 (MQ=255) aaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTACAGGCAAATTATACAACACTTTACGAGATAGTGAGTCCGCATGaaa < 2:426368‑M1/64‑1 (MQ=255) tacctacgaacatcttccatgcttctcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga > 2:41374‑M1/72‑143 (MQ=255) tacctacgaacatcttccacgatactcctgcagcgaaatatttgttttaagttgactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga > 1:406574‑M1/72‑143 (MQ=255) tacctaccaacatcttccagtatacttctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga > 2:8610‑M1/72‑143 (MQ=255) gacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga > 2:68553‑M1/72‑143 (MQ=255) tacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCAGAAAAAACGCGAGAGt < 2:629482‑M1/76‑1 (MQ=255) gaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGgc > 2:188143‑M1/65‑143 (MQ=255) aacatcttccaggatactcctgcagcgaaatctttgttttaagctcactcacatatcgcaacaTTTAGTTTACGACAATTCCAGGCAAATTATACAACACTTTCCGGGGTAGTAAGGCCGCCTGAAGAAacgcgagagggggg < 1:302571‑M1/80‑6 (MQ=255) aacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTGCATTTAAGACAGTTCCAGGCAAATTATACAACACTTTAGGGGGTAGTAAGTCAGCTTGTAGAATGGCGAGAGTGgcg < 1:301936‑M1/80‑1 (MQ=255) tcggccacgctactcctgctgccaaatatttgtcttgagctcactcacatatcgcaacaTTTACTTTAGTACATTTCCAGGCAAACTATACAAGCCTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCAtt > 2:647487‑M1/60‑143 (MQ=255) ggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGAc > 1:218845‑M1/53‑143 (MQ=255) ctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACACCACTTTACGGGATAGTACGTCCGCCTGAAAAATCGCGAGCGTGGCGCATTAGGCGACCCAggttg < 2:212673‑M1/99‑1 (MQ=255) cgaaatatttgttttaagctcacccgcatatcgcaacaTTTACTTTACGACAATTCCAGGCCAATTATACAACACTTTACTGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGt > 2:368211‑M1/39‑143 (MQ=255) gaaataattgatttaagctcactcacatatcgcaacaTTTACTGTAAGACAATTCCAGGCAAATTATACAACAATTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAATGGCGCATTAGGTGACCCATGTTGTTCCGtt > 1:47168‑M1/38‑143 (MQ=255) aatatttgttttaagttcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACTCTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTa > 2:25052‑M1/36‑143 (MQ=255) tttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCa < 2:116756‑M1/112‑1 (MQ=255) ttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCatgat < 1:520258‑M1/116‑1 (MQ=255) ttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGCCTAGTtattatgg < 1:59220‑M1/118‑2 (MQ=255) ctcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAg > 2:189522‑M1/17‑143 (MQ=255) ctcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAg > 1:43477‑M1/17‑143 (MQ=255) tcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAGTATGCAgg < 2:679722‑M1/128‑1 (MQ=255) atatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAg < 2:318621‑M1/132‑1 (MQ=255) cgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGGTGTTACGACGAGCCCAGATGAACTAGACAGCTAAGGGGa < 2:657010‑M1/136‑1 (MQ=255) cgcaacaCTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGa > 1:291974‑M1/8‑143 (MQ=255) aTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATc > 1:34623‑M1/2‑143 (MQ=255) TTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTATGGGTTAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCCTTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGCAATCTTCAGATCAGGGGAATTATCg < 2:320081‑M1/143‑1 (MQ=255) TTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGGAATATTCAGGTAAGGGGCATTATCg < 1:526210‑M1/143‑1 (MQ=255) | GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCG > NC_000913/2023661‑2023943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |