Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 64 [0] [0] 66 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)59 (1.400) 47/268 0.0 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258545‑258826
                                                                                                                                           |                                                                                                                                              
taaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                                                                                                             <  2:584808‑M2/4‑1 (MQ=255)
   aaatttgctaaattttgccaatttggtaacacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcacgtatatttgtgagggtaACTGCaa                                                                                                                                          >  2:45210‑M2/137‑143 (MQ=255)
    aatttgctaaattttgacaattgggtaaaacagttgcattacaacaggagatagcaatgacgttaccgacttgacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                                                                                                                         <  2:468977‑M2/8‑1 (MQ=255)
       ttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgtgaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                                                                                                                      <  2:27499‑M2/11‑1 (MQ=255)
           taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgcgcgaaaagtgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  1:182743‑M2/129‑143 (MQ=255)
           taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatgtaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  1:294893‑M2/129‑143 (MQ=255)
           taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgaaaaaagaaggtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                  >  1:672207‑M2/129‑143 (MQ=255)
            aaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                                                                                                                 >  2:461500‑M2/128‑143 (MQ=255)
            aaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                                                                                                                 >  1:533228‑M2/128‑143 (MQ=255)
            aaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                                                                                                                 >  1:359386‑M2/128‑143 (MQ=255)
                  tgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt                                                                                                                           >  2:372555‑M2/122‑143 (MQ=255)
                   gccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt                                                                                                                          >  2:632234‑M2/121‑143 (MQ=255)
                     caatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        <  1:413951‑M2/25‑1 (MQ=255)
                     caatttggtaaaacaggtgcatcacaacaggagatagcaatgacgtgaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                        <  1:279465‑M2/25‑1 (MQ=255)
                      aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                       >  2:308667‑M2/118‑143 (MQ=255)
                      aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagctaAGTGCAAAGATAACCGATTCTTTTTc                                                                                                                       >  2:11717‑M2/118‑143 (MQ=255)
                      aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacacgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCGAAGATAATCGATTCTTTTTc                                                                                                                       >  1:410234‑M2/118‑143 (MQ=255)
                       atttggtaaaacagttacatcacaacagaagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaagcccgcaaattagtgaaggaaAGTGCAAAGATAAACgattcttagaaa                                                                                                                      >  2:561070‑M2/117‑138 (MQ=255)
                         ttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgttcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                                                                                                                    >  2:517431‑M2/115‑143 (MQ=255)
                             taaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                <  1:35506‑M2/33‑1 (MQ=255)
                                  cagtttcatcgcgacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaacaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt                                                                                                           <  2:718965‑M2/38‑1 (MQ=255)
                                        catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                     >  2:42390‑M2/100‑143 (MQ=255)
                                           cacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTCTGAGTc                                                                                                  >  2:371379‑M2/97‑143 (MQ=255)
                                                caggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcaccaggcccgtatattcgtgaaggtaCGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCCACGt                                                                                             >  2:363430‑M2/92‑143 (MQ=255)
                                                 aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTg                                                                                            <  1:343430‑M2/53‑1 (MQ=255)
                                                   gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTCTGCGTCAACGTGaa                                                                                          >  2:149562‑M2/89‑143 (MQ=255)
                                                     ggttgcaatgacgttaccgagtggacgcccgaagagcggattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAc                                                                                        <  2:37435‑M2/57‑1 (MQ=255)
                                                             tggcgttaccgagtggagacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCg                                                                                <  2:760699‑M2/65‑1 (MQ=255)
                                                                 gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGACTGTCTGGCTGCAGGCGTCAACGTGAAACCGGCACCggacg                                                                            >  1:188581‑M2/75‑141 (MQ=255)
                                                                 gttaccgagtggacacccgaacagcagattgctcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTCTCTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAg                                                                            <  2:438981‑M2/69‑1 (MQ=255)
                                                                  ttacagaatgcacaccggaagagcagattgatcaaaaaattgaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTGCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt                                                                           <  2:594922‑M2/70‑1 (MQ=255)
                                                                  tgagcgactggaccaccgaagagcagattgatcaaaaaattcgccgcactaggcccgtatattcgtgaaggtaAGTGGAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTGAACGTGAAACCGGCACCGGAAGt                                                                           <  2:533674‑M2/70‑1 (MQ=255)
                                                                    accgagtggacacccgaagagcagattgatcaaaaaatttgccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc                                                                         <  2:782309‑M2/72‑1 (MQ=255)
                                                                      cgagtggacacccgaagagcagattgatcaaaaactttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCCATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                       <  1:769941‑M2/74‑1 (MQ=255)
                                                                         gtggacatccgaagcgcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaa                                                                    <  1:457990‑M2/77‑1 (MQ=255)
                                                                              cacccggagagcagagtgatgaagaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                               <  2:699641‑M2/82‑1 (MQ=255)
                                                                                cccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTggg                                                             <  1:732064‑M2/84‑1 (MQ=255)
                                                                                 ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg                                                            >  1:494855‑M2/59‑143 (MQ=255)
                                                                                   gaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCt                                                          <  1:42390‑M2/87‑1 (MQ=255)
                                                                                         cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                    >  1:422492‑M2/51‑143 (MQ=255)
                                                                                         cagattcatcaaaacatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga                                                    <  1:239714‑M2/93‑1 (MQ=255)
                                                                                           gattgatcaaaaaatgggccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                  <  1:440535‑M2/95‑1 (MQ=255)
                                                                                           gatgcggcaaaaaatttcccgcactaggcccgtatattcgtgaaggtcAGTGCAACGATAATCGATTCTTTCTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                                  <  2:429940‑M2/95‑1 (MQ=255)
                                                                                            attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggacgg                                                 >  1:312523‑M2/48‑143 (MQ=255)
                                                                                               gatcaaaaaatttaccgcactaggcccgtatattcgtggaggtaAGTGCAAAGATAATCGATTCTTTTGCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGc                                              <  2:484109‑M2/99‑1 (MQ=255)
                                                                                                  caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGAGCTgg                                           >  2:274337‑M2/42‑143 (MQ=255)
                                                                                                   aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                          >  1:747913‑M2/41‑143 (MQ=255)
                                                                                                    aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATGCTGGGGCTGGTGGATGGAGCTGGaa                                         >  2:797502‑M2/40‑143 (MQ=255)
                                                                                                         tttaccgcacgaggcccgtatattcgtgaaggtaAGTGCAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                    <  1:524857‑M2/109‑1 (MQ=255)
                                                                                                             ccgtactagtcccgtttattcgtgatggtaAGTGTAAGGATATTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAGCGGCATCGGAGGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGaa                                <  2:656097‑M2/113‑1 (MQ=255)
                                                                                                              cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGCGCTGGCGGGTGGAGCGCGAAGCGCCGGAAt                               >  2:306148‑M2/30‑143 (MQ=255)
                                                                                                                   taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCAAGGTGAAACCGGCACCGACACTGCGTGTTTTTTGGGGCTGGTGGGTGGGGCTGGAAGCGCCGGCTTCCCGt                          >  1:30167‑M2/25‑143 (MQ=255)
                                                                                                                    agggccgtatattcgtggaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTTGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                         <  1:267248‑M2/120‑1 (MQ=255)
                                                                                                                    aggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                         <  2:332361‑M2/120‑1 (MQ=255)
                                                                                                                        ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                     <  2:182743‑M2/124‑1 (MQ=255)
                                                                                                                        ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                     <  1:583532‑M2/124‑1 (MQ=255)
                                                                                                                        cagcatattcttgaatgtaAGTTCAAAGTCAATCTATTCTTTTTCGATCCTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                     <  2:738613‑M2/124‑1 (MQ=255)
                                                                                                                           tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTCGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTa                  <  1:517431‑M2/127‑1 (MQ=255)
                                                                                                                               ttcgtgaaggtaAGTGTAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGt              <  1:546806‑M2/131‑1 (MQ=255)
                                                                                                                                   tgaaggtaAGTGCAAAGATAAGCGATTCTTTTTCGATTGTCTGGCGGTATGCGACAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGGTTTACCTACAGTTAcc          >  2:136432‑M2/9‑143 (MQ=255)
                                                                                                                                    gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGGAGCGCAGGAATCCAGTTTTAACTACAGCtacaa         >  2:318025‑M2/8‑141 (MQ=255)
                                                                                                                                      aggtaAGTGCAAAGATAGTCGATTCTTTTTCGATGGTCTGGCTGTATGAGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGt       <  1:806497‑M2/138‑1 (MQ=255)
                                                                                                                                       ggtaAGTGCGATGATTATCGAGTCTTTTTCGATGGCCTGGCTGTATGCTTTAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTTCAGTTACCAGtt      <  2:558490‑M2/139‑1 (MQ=255)
                                                                                                                                         taAGTGCAAAGATAATCGATTCCTTTTCGATGGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg    <  1:682834‑M2/141‑1 (MQ=255)
                                                                                                                                           aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  1:372555/143‑1 (MQ=255)
                                                                                                                                           aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt  <  1:461500/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                              
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGT  >  NC_000913/258545‑258826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: