| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 50 (0.950) | 40/284 | 0.3 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1303476 = | 0 (0.000) | coding (578/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258535‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303476‑1303612 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAACACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCCC > 2:420989/1‑143 TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCCGCATCACCCCCGTGGCTC > 1:431704/1‑143 CGGCGGTGCTTTTGCCGTTACGCACCACACAACCGCAACCCGAGCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTA < 1:397157/143‑1 GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGCTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTCCCTCTct > 1:332938/1‑141 GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATT > 1:382571/1‑143 ctctgGCCGTGACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCGCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 1:419479/138‑1 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 2:180431/143‑1 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 1:62211/143‑1 TTTTGCCGTTACGCACCACACCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCAACTGGGGCACGTCAAAAACACCATCATACACTAAATCAGCAAGTCGGCAGCATCACCCCCGCGGCGCTCTAGTTGAAG > 2:941847/1‑143 CCGTTACGCACCACCCCGTCAGCAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTA < 1:162605/143‑1 CCGGTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTA < 2:362222/143‑1 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACGCGCCA > 1:731505/1‑143 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAACTCAAAACCACCATCATACACTAAATCAGTAAGTTGGAAGTATCACCCACGTGGCGACATGAGTGAAGTATTACAATCaa > 2:329188/1‑141 CACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAA < 2:218444/143‑1 CCGTCAGTGGCTGAACAGGAGGGACAGCTGATAGAAACAGCAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATT < 2:255076/143‑1 GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAGCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCC > 1:163843/1‑143 CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCC > 2:177781/1‑143 CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCC > 1:367183/1‑143 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGCGCACCTCAAAAACACCATCATACACTAAATCCGTAAGTTGCCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGG < 1:727694/143‑1 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAGGTATTACACTCCAGTTTTATTCGTACTGCCCGGGCGCAA > 1:185786/1‑143 tggcCAGCTGATAGATCCACAGGCCACTGGAGCTCCTCAAAAACACCATCATACACTAAATCATTAAGTTGCCAGTATCATCTCTGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGG < 2:381540/139‑1 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGACAGGG > 2:560095/1‑143 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTATTAAAGAAAATTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGG > 1:903395/1‑143 CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCT > 1:95130/1‑143 ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGACGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTAACTGTG > 1:186250/1‑143 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCACTCTGACTGAAGTATTACACTCCAATTCTAGTCGTACTGCCCGGGCGAAAGGGTAACCTATGCa > 2:137295/1‑142 AACAGATGCCACTGGAGCACCTCAAAATCACCATCATACACTAGATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGCAGTATTACTCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCG < 2:930181/143‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCG > 2:654050/1‑143 CAGAAGCCACTGGAGCTCCTCAAAAACACCATCATACACTGAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGA < 2:892545/143‑1 CTGGAGCACCTCAAAGACGCCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTAC < 1:571376/143‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCA > 1:195930/1‑143 CACCTCAAAACCACCAGCATACACTAACTCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACG < 1:47701/143‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCAT > 1:185034/1‑143 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTCCCTATGCGGCGGATCATTTTACGTCACGCATT > 1:597093/1‑143 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACCCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGAGGATCATTTTGCGACACGTATTAca > 2:53073/1‑141 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAc > 1:257174/1‑142 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAAC < 1:558014/143‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATGTTACGTCACGCATTAAAACCT > 1:515535/1‑143 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATCTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCT > 2:428334/1‑143 TCATACACTTTATCAGTAAGTTGGCAGCATCACCCCCGTGGCTTGATGATTGAAGTATTACACTCCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCT < 1:835285/143‑1 cgCTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTAC < 1:268352/141‑1 ACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACC < 1:648419/143‑1 AAATCTGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGT < 1:331515/143‑1 AATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTG > 2:487032/1‑143 TCAGTAAGTTGGACGCATCAGTCACGGTGCTCTATGATGGAAGTATTACACTTCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGGTCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCT < 2:522516/143‑1 TAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCT < 1:238280/143‑1 TAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTCTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTCCCCGTGCTCTCT > 1:88641/1‑143 gAGTTGGCAGCAGCACCCCCGTGGCGCTATGGTGGAAGTATGACACTCCAAGTTTAGTCGGACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTT < 2:895969/142‑1 AAGTTGGCAGCATCACCCCCGTGGCTCTATGATTTAAGTATTACATTCCAATTTTCTTTGGACTGTCCGGGTGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGTTCTGTTACCCGTGCTCTCTT < 2:332938/143‑1 ATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTCATATGGGCCCC > 2:687729/1‑143 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258535‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303476‑1303612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |