mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.2% | 49.5 / 36.9 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 13 (0.260) | 8/272 | 5.3 | 31.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038811 | 29 (0.550) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 13 (0.260) | 7/272 | 5.7 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 20 (0.380) | 13 (0.260) | 7/272 | 5.7 | 40.4% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1417458 = | 62 (1.170) | 4 (0.080) | 4/264 | 7.1 | 6.4% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein |
| ? | NC_000913 | 1417483 = | 59 (1.200) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 4038798 | 38 (0.720) | 11 (0.220) | 4/272 | 7.3 | 25.2% | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4038805 | 29 (0.570) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3944991 | NA (NA) | 10 (0.200) | 4/272 | 7.3 | 21.6% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038798 | 38 (0.720) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 227052 | 20 (0.380) | 10 (0.200) | 4/272 | 7.3 | 25.9% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 4038792 | 38 (0.750) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3858205 | 69 (1.310) | 3 (0.060) | 3/258 | 7.6 | 4.6% | coding (200/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3858228 | 61 (1.270) | coding (177/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 282061 = | 51 (0.970) | 4 (0.080) | 3/262 | 7.7 | 7.3% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 54 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
| * | ? | NC_000913 | 4606558 = | NA (NA) | 3 (0.060) | 3/270 | 7.9 | NA | noncoding (1/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4606590 = | NA (NA) | noncoding (33/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||