| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979268 | 1979278 | 11–776 | 47 [0] | [0] 47 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 46 (1.330) | 38/268 | 0.0 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCT > NC_000913/1979139‑1979416 | gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat < 1:637933‑M2/3‑1 (MQ=255) tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata > 1:505528‑M2/140‑143 (MQ=255) tctttacacttatctaagatctttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaacataaatgtata < 2:276410‑M2/4‑1 (MQ=255) ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa < 2:504110‑M2/5‑1 (MQ=255) ctttacacttatctaagatttggcccaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa < 1:387520‑M2/5‑1 (MQ=255) tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt < 1:433980‑M2/16‑1 (MQ=255) tctaagatttgtcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt < 2:452369‑M2/16‑1 (MQ=255) tcgaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt < 2:324223‑M2/16‑1 (MQ=255) cgaagatttttcgtgaatcgacgcggctggagtcgtcagtacacgcacgtacggcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtgttg < 2:28491‑M2/17‑1 (MQ=255) gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattgtcaataatgcgtaatccacatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACttttgcttt > 2:365391‑M2/123‑143 (MQ=255) tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgtgtgatgcagaacacaataaacactaaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg > 1:248962‑M2/121‑143 (MQ=255) tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg < 2:316092‑M2/23‑1 (MQ=255) cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa < 1:275404‑M2/28‑1 (MQ=255) taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt > 1:567177‑M2/114‑143 (MQ=255) aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGCTTTGGGTGCAttt > 2:56688‑M2/113‑143 (MQ=255) atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTCTTGGGTGTATTtcc > 1:31147‑M2/111‑142 (MQ=255) gacgcaactgtactcgtcactacacgcacatacaacggagacaggctgcgattttcaataacgcgcgagccagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc < 1:217727‑M2/36‑1 (MQ=255) caactgttcgcgtccctacacacacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt < 1:88683‑M2/40‑1 (MQ=255) aactgcactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa > 1:273648‑M2/103‑143 (MQ=255) tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacataacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa > 2:355393‑M2/100‑143 (MQ=255) tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaaccctcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGGCTGTATTTACATGTGTTaaaa > 2:381332‑M2/100‑143 (MQ=255) gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGCTTTGGGTGTATTTCAATCTGTTacaaa > 1:632798‑M2/99‑143 (MQ=255) tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatccgtgatgcagatcacacaaaacactcaattacttaacatacatgCAAAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt > 2:656042‑M2/95‑143 (MQ=255) tcactacacggacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttatttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc < 2:84611‑M2/52‑1 (MQ=255) tagacccacatacaacggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta < 2:239113‑M2/56‑1 (MQ=255) cgctcctacatcggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacttaaatcTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct < 2:79880‑M2/60‑1 (MQ=255) tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTCACATGCGCTCAGGTAAAAAGTTTTTCGCTACGCTagcaag > 2:294896‑M2/78‑143 (MQ=255) acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTGGTTGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCCACGCTagcaagc > 1:125692‑M2/77‑143 (MQ=255) acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTATTGTTTTGGGTGTATTTCAATCTGATAAAAAGTTTTTCGCTACGCTagcaagc > 2:54001‑M2/77‑143 (MQ=255) ggaggggggctgcgatttttaatatgtcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa < 2:537402‑M2/72‑1 (MQ=255) ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa < 1:574780‑M2/77‑1 (MQ=255) taaggcgtgatgctgatcacacaaaaccctcaattacttaccataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg < 1:629974‑M2/94‑1 (MQ=255) catgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTATGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg < 1:538974‑M2/95‑1 (MQ=255) atgcagatcacacaaaacactcagttacgtaacgtaaaggTGTAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGGTATAATCGAAATGGGATGTTgc < 2:554679‑M2/103‑1 (MQ=255) cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca < 1:358251‑M2/106‑1 (MQ=255) atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg < 1:173901‑M2/109‑1 (MQ=255) caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa < 2:273648‑M2/115‑1 (MQ=255) tcacttcattaattaacataaatgTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTGGTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAc < 1:374769‑M2/119‑1 (MQ=255) tcaattgcttaacataaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAGAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAGTCGAAATGGGAGGTGGCACACAGTCAAAATAAgtcgc > 2:317361‑M2/21‑141 (MQ=255) tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGGTGTTGCGCACAGTCGAAATAACTCAc > 1:200698‑M2/21‑143 (MQ=255) tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc > 1:389826‑M2/21‑143 (MQ=255) caattacttaacataaatgTATAAGTTATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGGTAGCAAGCAAAAATGAAACAGGAATAATCGAAAAGGGATGTTGCGCACAGTCAAAATAACTCAcc > 2:551719‑M2/20‑143 (MQ=255) caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc < 1:296644‑M2/124‑1 (MQ=255) aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg > 1:499446‑M2/19‑143 (MQ=255) ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAACTTTCTCTCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCTCACAGTCAAAATACCTCACCGTAaata > 2:451678‑M2/13‑143 (MQ=255) taaaataaatgTATAAGTCATACTTTTGTTTTGCGTGTATTTCAATCTGTTAAAAAGTTTTTCGTTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa < 1:548837‑M2/132‑1 (MQ=255) aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt < 1:513040‑M2/138‑1 (MQ=255) | CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCT > NC_000913/1979139‑1979416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |