| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 26 [1] | [0] 25 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 1 (0.050) | 24 (1.270) | 21/268 | 0.1 | 98.1% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT > NC_000913/258544‑258823 | ttaaaaatttgctaaatttggccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcattagtcccttatattcgtgaaggtaAGt < 2:335919‑M2/3‑1 (MQ=255) taaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaccaggcgatagcaatgacgttcccgagtggacacccgaagagcaggttgatcaaaaaatacaccgcactagacccgaaaaatcgtgaagataagag > 1:301815‑M2/140‑141 (MQ=255) aaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagaagattgatcaaaaaatttaccgcactaggcccgtatattggtgaaagaaAGTGCa > 2:364051‑M2/138‑143 (MQ=255) taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 2:107785‑M2/15‑1 (MQ=255) catttgcaccacaacaagatatcgcaattactttacccagtcgacaccctaagagctgattgagcaaaaaattgaccgcacttggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt < 2:331854‑M2/38‑1 (MQ=255) gttgcatcacagcaggggatagcactgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcttgaaggtaAGTGCAAATATAATCGATTCTTTTTCGATTGTCTGGCTGt < 2:298178‑M2/40‑1 (MQ=255) catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattaataaaaaaatttaccgcaataggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 1:229937‑M2/100‑143 (MQ=255) ggttctagcaattacgtttccgagtggacccccgatgagcagtttgattaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa < 2:91015‑M2/54‑1 (MQ=255) acacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAACACGTGAATTCt > 2:71787‑M2/63‑143 (MQ=255) gccggattgatcaaaaattttaccgcagtaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAACCCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg < 2:28484‑M2/91‑1 (MQ=255) agcatattgattaaataatttaccgtactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg < 2:174738‑M2/91‑1 (MQ=255) gcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCCAAGACAAGCGTTTCTTTTTCGTTTGTCTGGCTGTATGCGTAAATGTGAAAACAGAACAGGAAGAACGTGAATTCTGGGGCtggtgg > 1:98572‑M2/52‑143 (MQ=255) attgatcataaaatttacctgtctgtggccgtatattcgtgaaggtaAGTGCAAAGATAGTCGATTCTTGGGCGATGGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgg < 1:106180‑M2/96‑1 (MQ=255) attgatcaaaaaatttaccgcactaggcacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTGTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGGGCGTGCATTCGGGGGAtggtagaatg > 2:211535‑M2/48‑140 (MQ=255) cgttcaaaagagttaccgcactaggcgcgtatattcgtgaaggtaAGTGCAAAGAGAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg < 2:320757‑M2/98‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGCGAAACCGGCACCGGAAGTACGTGGATTCTGGGGCTGGTGGATGGAGCTGGa > 2:39183‑M2/41‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggcaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCAGCACCGGAAGTGCGTGAATTCTGGGACAAGTGGAGGGAGctgct > 2:328831‑M2/41‑141 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGCTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGCGCTGGTGGATGGAGCTGGaa > 2:50634‑M2/40‑143 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACATGAAACCGGCACCGAAAGAACGAAAAATCTGGGGCTGGTGGATGGAGCTGGaa > 1:307647‑M2/40‑143 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGAGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgc < 1:111471‑M2/106‑1 (MQ=255) gcgctaggcccgtatattcgtggaggtaAGTGCAAGGATAATCGATTCTTGGTGGATGGTCGGGCGGTATGCGGCAACGTGAAACCGGCACCGGAAGGGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc < 1:16215‑M2/115‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGTTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGAGGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa < 1:45849‑M2/129‑1 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGGGAAACCGACCACGGAAGTACGAGAATTCTGGGGCCGGTGGATGGAGCCGGCAGCGCAGGAATCGCGGTCTCCCtaccg > 2:90782‑M2/14‑141 (MQ=255) gtgaatgtaAGTTCAAATATTTTCTTTTCTTTTTTGATGGTCTTGTTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc < 1:11540‑M2/134‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCATCGGTAGTGCTTTAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt < 1:27535‑M2/140‑1 (MQ=255) | CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT > NC_000913/258544‑258823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |