New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423374 =	68 (1.120)	8 (0.130)	7/278	6.9	10.7%	intergenic (+182/+47)	yhdZ/rrfF	putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
	?	NC_000913	3423663 =	NA (NA)					intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA of rrnD operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423525‑3423800                                                                                                                                           |                                                                                                                                          cTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGAt                                                                                                                                       <  2:737803/143‑1 (MQ=255)              aCAGATTCTTCTCTAATCTGCCGACCTTTAACCTAACACGTGGTGCTGATACCCAGAGCCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTcc                                                                                                                          <  1:559815/143‑1 (MQ=37)                      ttttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACtctc                                                                                                                  >  2:245102/1‑143 (MQ=255)                        ttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATCTGATGCCTGGCCGTCCCCTACCCCCGc                                                                                                                >  1:939470/1‑143 (MQ=37)                             aagtGCCGAACATTAGCCGGAAAGGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCCCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg                                                                                                           <  2:190208/140‑1 (MQ=37)                             aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCGACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg                                                                                                           >  2:537093/1‑143 (MQ=255)                              ccTGCCGAACTTTAACCTAAAGCGTCGTGCTAGCGGGCACAGTCGAGCTGGGCACCTCACCGTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgggg                                                                                                          <  1:218930/142‑1 (MQ=25)                                      aCTTTAACCTAAAAAGTGGTGGTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCGTGGCAGTTCCCTACTCTCGCATGGGGAGACCCca                                                                                                  <  2:566804/143‑1 (MQ=255)                                                aaaagGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGGTCCCTACTCTCGCATGGGGAGACCCCACACAACCATc                                                                                        >  2:735714/1‑143 (MQ=255)                                                        gtgCTGATACCCAGAGTCGAACTGGGAACCTCACCCTTACCAAGGGTGCGCTCTAGCAACTGAGCCATCTCAGCACGCTGCATTTGATGCCTGCCACGTCCCTACTCCCGCCCGGGGACACCCCACACGACCATCCGCGCtcc                                                                                >  1:1013480/1‑141 (MQ=21)                                                           cTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGc                                                                             >  2:351788/1‑143 (MQ=255)                                                            tGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTCAATTTGATGCCTGGCAGTTCCCTACTCTCGCCTGGGGAGACCCCACACAACCAGCGGCGCTACGGCg                                                                            >  2:419845/1‑143 (MQ=255)                                                                  ccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTACATTTGATGCCTGGCAGTCAACAACTCTTGCATGGGGGGACCGCACACTACCATCGGCGCTGGGGCGTTTCAc                                                                      >  2:40166/1‑143 (MQ=25)                                                                   cAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACTAACTGTGCCAGATCAGCACGCTTAAATTCTTCCCAGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACt                                                                     >  2:779451/1‑143 (MQ=21)                                                                    agagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGGGCTACGGCGTTTCCCtt                                                                    >  2:127800/1‑143 (MQ=255)                                                                    agagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACtt                                                                    >  2:790915/1‑143 (MQ=255)                                                                          gAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACCCTACCATCGGCGCTCCGGCGTTTCTCTTCTGAGt                                                              >  2:234252/1‑143 (MQ=255)                                                                           aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCCTATCAGCACGCTAAATCTGATGCCTGGCAGTTCCCTACTCTCGCATCCGGAGACCCCCCACCACCCCCGGCCCCACGCCGTTTccccaccgactc                                                             >  1:55414/1‑132 (MQ=21)                                                                           aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGGGtt                                                             >  2:496109/1‑143 (MQ=255)                                                                             ttGGGGACCTCCCCCCTGACAAGGGTGCGCTCTACCAACTGCGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCg                                                           <  2:799729/142‑1 (MQ=18)                                                                                  gACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATg                                                      <  1:245102/143‑1 (MQ=255)                                                                                    ccccACCCCCACCAACGGTGCGCTCCACCCCCCCAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATggg                                                    <  2:318018/140‑1 (MQ=17)                                                                                     cTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTAGAATGGGAAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGCCATgggg                                                   >  1:921716/1‑143 (MQ=255)                                                                                          ccTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCATCGGCGCTCCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCCgg                                              >  1:226847/1‑143 (MQ=255)                                                                                               ccAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTAATCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGATCGGCATGGGGGCAGGTGGGa                                         >  1:407506/1‑143 (MQ=255)                                                                                                          ctctACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcgctggt                              >  2:109806/1‑139 (MQ=255)                                                                                                             tACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGCCACGTGGGACCACCGCGCTActg                           >  1:606324/1‑141 (MQ=255)                                                                                                             tACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGCGCACCGGCGACCCCCGCGCTACgg                           >  1:170070/1‑143 (MQ=17)                                                                                                               ccAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgcc                         >  2:586047/1‑143 (MQ=255)                                                                                                                   cTGACCCATAACAGCACGCTAAACATGATGCCTAGCAGTTCCGTGCTCTCGCCTGGGGAGACCCCACACTACCACCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCa                     <  2:75711/143‑1 (MQ=14)                                                                                                                             tCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCCAActct           >  2:506425/1‑143 (MQ=255)                                                                                                                                gCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCACATTCTGtt        >  1:845219/1‑143 (MQ=25)                                                                                                                                gCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCGAAATCTGtg        >  1:397659/1‑142 (MQ=25)                                                                                                                                     cTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATc   >  1:273113/1‑143 (MQ=32)                                                                                                                                      tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa  >  2:502641/1‑143 (MQ=31)                                                                                                                                      tAAATTTGATGCCTGGCAGTTCCCTACGCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa  <  2:387134/143‑1 (MQ=14)                                                                                                                                           |                                                                                                                                          CTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423525‑3423800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.