| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,527,656 | Δ5 bp | coding (1190‑1194/2136 nt) | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3527656 | 3527660 | 5 | 27 [0] | [0] 27 | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3527655 | 0 (0.000) | 27 (0.600) | 23/284 | 1.1 | 100% | coding (1189/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | 3527661 = | 0 (0.000) | coding (1195/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
ATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3527523‑3527655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAC > NC_000913/3527661‑3527793 ATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGGAGGCGATACATTGCAGCGGTACGG > 1:540663/1‑143 TGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGTAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAAATGGCTGACGCTAGCGTGCGGATAGGCGATACATTGCAGCAGTACGGGAAT > 1:621881/1‑143 ttttcGATCCCGATGGATCTCATCCTGAAATTCCCTCTCTCATGCATGAAAGGCGCGCAGACCATTGAACCCACCAGCGTAAAACAACTGCCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTA < 1:39885/138‑1 TCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAA < 2:366379/143‑1 cGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATA < 1:247293/142‑1 CTGGATATGCCGCTGAAATTCACTCTCTCATGGGTGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGGTACATTGCAGCGGTACGGGAATGTGGAATATTCGAAgtg > 2:31976/1‑140 ATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGACACATCGCAGCGGTGCGGGAAGGTGTAATATTCCGACTTCCGGGACCTGGGGGGCG > 2:396494/1‑143 TGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCAC < 1:611258/143‑1 GGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACC < 1:341578/143‑1 GAAAGGCGCGTAGATCTTTGAAGTTATCAGAGTTAAACAACTGGCTGACGTGGGCGTGTGGGTAGGCGATACATTGCAGCGGTAAGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTT < 2:405608/143‑1 GAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCGATTCACCTTTT > 1:15808/1‑143 GAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTT > 1:461636/1‑143 GCGCGCAGACCATTGAAGGCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACC < 2:508764/143‑1 CGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCG < 1:61305/143‑1 GCAGACCAGTGAAGCCACCAGCGTAAAACACCTGGCGGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTT < 2:461636/143‑1 AGACCAGTGAAGCCCCCAGCGTAAGACAACGGGCGGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGA < 2:668557/143‑1 GCCCCCAGCGTACAACAACTGGCTGCCGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGA < 2:597503/143‑1 tgccgGCGTAAACCAACTGGCTGACGCGGGCGTGCGGGTAGGCGATACGTTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAACACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATC < 2:33250/138‑1 cagCAGCGTAACATAACGGGCTGCCGCTGGCGTGCGGGTAGGCGATACCTTGCAGTGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAACACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATC < 2:275380/140‑1 CGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTTCTCtccggtcctccgg > 1:414802/1‑130 GTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATCCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGA > 2:267919/1‑143 TAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCAGCGGTACGGGAATGTGTAATGTTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCCGATAATCAGGAA > 2:232177/1‑143 GCTGGCGTGCGGGTAGGCGATACACTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGC < 1:268506/143‑1 GGGTAGGCGCTACATTGCAGCGGTACGGGTATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGGTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGA < 2:606611/143‑1 TAGGCGATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGACCATCTGGAACGACGCCCGCTCATTGCCATTCCCAGAATC > 2:373381/1‑143 GATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCTTTGCGTTTGCCAGAATCTacac > 1:322812/1‑139 GATACATTGCAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAC > 1:414337/1‑143 ATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3527523‑3527655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATCTGAAC > NC_000913/3527661‑3527793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |