New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4158459	55 (1.220)	3 (0.070)	3/270	6.5	5.6%	intergenic (‑66/‑30)	oxyS/oxyR	sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator
	?	NC_000913	= 4158469	48 (1.120)					intergenic (‑76/‑20)	oxyS/oxyR	sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGA  >  NC_000913/4158328‑4158610                                                                                                                                              |                                                                                                                                              ttCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTTCCTATCGCCATGAACTATCGt                                                                                                                                              >  2:365782/1‑143 (MQ=255) tgcgaggcgagcAACTCTCGAAACGGGCAGTGACGTCAAGGGTAAAAGGAGGTGCCGCTCCGTTCCTGTGAGCAATTAGCAGTCAGAATGCTTGATAGGGATAATCGTTCAGTGCTATTCTACCTATCGCCATGAACTATCGt                                                                                                                                              <  1:150603/135‑1 (MQ=255)      gTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGa                                                                                                                                         <  1:653303/143‑1 (MQ=255)          cgaAACTCTCGAGACGGGCCGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                                     <  2:182156/142‑1 (MQ=255)          agaAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                                     >  2:576171/1‑143 (MQ=255)          agaAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCAATgga                                                                                                                                     >  2:462568/1‑143 (MQ=255)          agaAACGCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                                     <  2:352065/143‑1 (MQ=255)            aaaCTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGTGGTGCCGCTCCGTTTCTGTGAGCCATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCGACCTATCGCCATGAACTATCGTGGCGATggagg                                                                                                                                   <  2:71638/143‑1 (MQ=255)              aCTCTCTAAACGGGCAGGGACTTCAAGGGTTACAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAggat                                                                                                                                 <  1:92013/143‑1 (MQ=255)              aCTCTCGAAACGGGCAGCGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAggat                                                                                                                                 <  2:290563/143‑1 (MQ=255)                     aaaCGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGCggttggctcac                                                                                                                          >  2:672510/1‑138 (MQ=255)                             aGTGACTTCAAGGGTTAAAAGCGGTGTCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTc                                                                                                                  <  2:9053/143‑1 (MQ=255)                             aGTGACTTCAAGAGTTAAAAGAGGTGCCGGTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTc                                                                                                                  <  1:458060/143‑1 (MQ=255)                              gTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCg                                                                                                                 <  1:119599/143‑1 (MQ=255)                               tGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAGTGCTTGATAGGGATAATCGTTCATTGCGATTCTACCTATCGCCATGAGCTATCGTGGCGATGGAGGATGGATAATGAATATTCGt                                                                                                                <  2:470109/143‑1 (MQ=255)                                   ttCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGAGGGAGGATGGATAATGAAGATTCGTGATc                                                                                                            >  2:371009/1‑143 (MQ=255)                                   ttCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTCGCGATGTAGGTTGGGTCATGGATATTCGTTAta                                                                                                            >  2:182605/1‑142 (MQ=255)                                      aaGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTg                                                                                                         >  1:455210/1‑143 (MQ=255)                                      aaGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTGCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTg                                                                                                         <  1:334079/143‑1 (MQ=255)                                         ggTTACAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGt                                                                                                      <  1:366008/143‑1 (MQ=255)                                                 gcgctGCCGCTCCGTCTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCtggtg                                                                                              <  1:413282/139‑1 (MQ=255)                                                 gagGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCtgggg                                                                                              >  2:480005/1‑141 (MQ=255)                                                       ccGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGCCGATGGAGGATGGATAATGAATATTCGTGCTCTTCAGAACCTGGTGGCATTg                                                                                        >  2:657623/1‑143 (MQ=255)                                                             cttttCTGTGAGCAATTGTCAGTCAGAATGCTTGATAGGGGTAATCGTTCAGTGCTAGTCTAGCTATCGCCAGGAACGAGCGTGGTGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGaa                                                                                  <  2:147746/141‑1 (MQ=255)                                                             cGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGACTATTCGTGATCTTGACTACCTGGTGGCATTGGCTGaa                                                                                  >  1:136118/1‑143 (MQ=255)                                                             cGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGaa                                                                                  <  2:420199/143‑1 (MQ=255)                                                               tttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGGTAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAaca                                                                                <  1:232505/143‑1 (MQ=255)                                                               tttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTCGCATTGGCTGcaca                                                                                >  2:423400/1‑143 (MQ=255)                                                                ttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGAT‑ATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACAcc                                                                              <  1:441688/143‑1 (MQ=255)                                                                 tCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACAcc                                                                              <  1:542832/143‑1 (MQ=255)                                                                     tgAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAacaaaccag                                                                          >  1:603875/1‑137 (MQ=255)                                                                               tcagtcagAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGt                                                                >  1:533385/1‑143 (MQ=255)                                                                                     agAATGCGTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCa                                                          <  1:495347/143‑1 (MQ=255)                                                                                           cTTGATAGGGATAATCGTTCATTGCTATTCTACCTCTCCCCGTGAACTATCGTGGCGTTGGAGGATGGATACTGAATAGGCGTGATGTTGTGGACCTGGTGGCATTGGCTGAACACCGCCCTTTTCGGCGTGCGGCAGAGTcc                                                    >  2:728472/1‑143 (MQ=255)                                                                                            ttGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCt                                                   >  2:766509/1‑143 (MQ=255)                                                                                                         tcgttcgtTGCTATTCTACCTATCGACATGAACTATCGTGGCGATGGAGGACGGATAATGAATATTCGTGATCTGGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagcca                                      <  1:182605/143‑1 (MQ=255)                                                                                                          cGTTCATTGCTAGTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccag                                     <  1:419729/143‑1 (MQ=255)                                                                                                               aTTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGCATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGAc                                >  2:96300/1‑143 (MQ=255)                                                                                                                 tGCTATTCTACCTATCGCCATGCACTATCGTGGCGATGGAGGATCGATAATGAATATTCGTGATCTTGCGTACCGGGTGGCATTGGCTGACCACCGCCATTTTCGCCGTGCGGCAGCTTCCTGCCACGTCAGCCAGCCGACGc                              >  2:292975/1‑143 (MQ=255)                                                                                                                 tGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCAGTGGCTGAACACCGCCATTTTGGGCGTGCGGGAGATTCCTGGCACGTTAGCCAGCCGACGc                              >  2:693282/1‑143 (MQ=255)                                                                                                                    tATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATCGATAATGCATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCGCGTTCGCCAGCCGACGCTTa                           >  2:101913/1‑143 (MQ=255)                                                                                                                        cTACCTTTCGCCATGAACTATCGTGGCGATGGAGGATGGATAACGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCgg                       <  1:203530/143‑1 (MQ=255)                                                                                                                               tCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGCTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTCACCGGGcgactt                >  2:26775/1‑138 (MQ=255)                                                                                                                                cGCTATGGACTATCTTGGCGATGGAGGATGGATAATGAATATTCGTCACCTTGCGTACCTGGTGGCATTGGCCGAACACCGCCATTTTCGGGGTGCGGCAGATTCCTGCCTCGTTAGCCAGCGGACGCTTAGCGGGCAAATTc               <  2:409660/143‑1 (MQ=255)                                                                                                                                cGCCATGACCTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTc               <  2:525320/143‑1 (MQ=255)                                                                                                                                 gCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGACGACGCACATCGGGCAAATCCg              >  2:583352/1‑143 (MQ=255)                                                                                                                                 gCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGGGCGGCAGGTTCCTGCCCCGGTAGCCAGCCGACGCCtggctggctccttcg              >  1:67795/1‑136 (MQ=255)                                                                                                                                   cATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTa            <  2:276151/143‑1 (MQ=255)                                                                                                                                        aCTATCGTGGTGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTg       <  2:41848/143‑1 (MQ=255)                                                                                                                                         cTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTgg      >  2:422474/1‑143 (MQ=255)                                                                                                                                             cGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa  <  1:462568/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              TTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGA  >  NC_000913/4158328‑4158610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.