| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275148 | NA (NA) | 40 (1.040) | 31/282 | 0.2 | 93.1% | intergenic (‑31/‑177) | insH1/mmuP | IS5 transposase and trans‑activator/CP4‑6 prophage, putative S‑methylmethionine transporter |
| ? | NC_000913 | = 618517 | 3 (0.080) | coding (264/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/275007‑275148‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < NC_000913/618517‑618383 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 2:260283/143‑1 AATCTCGTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTG < 1:355703/143‑1 ATCTCTTTTCTGATCTGACGGCGCGTGCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGA < 1:261517/143‑1 TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAA > 2:356392/1‑143 TCTCTTGTCGCGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAA < 2:32440/143‑1 CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTACTATCAGGGAATTGTTCGCCGCTTCCcgagtcctcac > 1:562798/1‑132 TTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTT < 1:267274/143‑1 TGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCGAGATGACAAACATGATCTCATCTCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTC > 2:338732/1‑143 CGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTT < 1:516818/143‑1 CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATTACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCTTCGTGCCTGCTTTCTCCCACCCTTGCC > 2:133728/1‑143 TTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACT < 2:277580/143‑1 TACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTCGCCCCTa > 1:315855/1‑142 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATGTCAGGGACTTGTTCGCACCTTCATTAGAGAATGATTTCTCCAACTCTTGCCACTAAACAG > 1:654550/1‑143 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGATCCAGATGGCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAG > 2:252549/1‑143 TTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCT < 1:529041/143‑1 TTCGCTGTCGGCGAAGGGACGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCT < 1:426011/143‑1 CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGT < 1:618831/143‑1 AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAA > 2:674831/1‑143 GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCG < 1:441373/143‑1 AAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTCAACAGGTTCTGGAGGCGTGACAACCcac > 1:362426/1‑140 GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATCTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGT > 1:605650/1‑143 TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCA > 2:428641/1‑143 TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCA > 2:372948/1‑143 atgagcAACCCTGTTCTATGGCTCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT < 2:159105/137‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCACCTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT < 2:62889/143‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATT > 2:389181/1‑143 aATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTCTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACCGGTTCTGGAGGCGTGCCAACCGCCGCCCTGGTCCATTTT > 1:642878/2‑143 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGC > 2:646454/1‑143 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTTCCGCTGGACAGGTTCTGGAGGCGTGACAACCGCCGCGAGGGGCCATTTTTGCGGCA > 2:59680/1‑143 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAA > 1:133287/1‑143 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCCTTTTTTCGGCAGGATGAAAGAGA > 1:525655/1‑143 TCCAGATGACAAACATGGTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGAT < 1:232585/143‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCACCTCTTGCCACTGAACAGGTTCTGGAGGCGTGATAACCGCCGCGCTGCTCCATTTTTGCGGCAGGATGAAAGAGATCAGCA > 2:318813/1‑143 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCA < 1:674831/143‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACCGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATGTTTGCGGCGGGATGAAGGAGATCAGAAAGCCT > 1:363446/1‑143 AAACATGAGCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTCGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCT < 2:559046/143‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTGCATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGGGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGCAAGAGCTCAGCAAGCCCGCGgcggag > 2:528704/1‑137 TCATATCAGGGACTTGTTCGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAA > 1:217099/1‑143 ATATCAGGTACTTGTTCGCACCTTCCTTAGTGAATGAAGGCGCCAACTCTTGCCACGGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAAC < 2:162188/143‑1 attAGGGACTTGTTCGCACCTGCCTTAGTGAATTATTTCTCCTACTCTTGCCACTGAACATGTTCTGGAGGCGTGATAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGC < 2:300402/140‑1 CGCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCA > 1:440850/1‑143 GCACCTTCCTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < 1:372948/143‑1 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/275007‑275148‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTGAATGATTTCTCCAACTCTTGCCACTGAACAGGTTCTGGAGGCGTGACAACCGCCGCGCTGGTCCATTTTTGCGGCAGGATGAAAGAGATCAGCAAGCCTGCGCAGGCAAACGCAAAAACGACCGCCAT < NC_000913/618517‑618383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |