New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 610141	48 (1.240)	3 (0.080)	3/270	5.3	6.1%	noncoding (25/98 nt)	RIP54 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP54 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 2291198	46 (1.250)					noncoding (48/199 nt)	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCCTGCTCACAAAAATTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/609993‑610141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAGTTTTGCGTTTGTCATAAATCTCAGCCCGATGATAAATCCATCGGGCTATTTTTATTGTGCCCCGCGTTGTTGCAGGAACAGAATGGTGGCCGCCACGCGTGAGCGGACATTGAGTTT  <  NC_000913/2291198‑2291080                                                                                                                                                                                                                                                                              ATCCTGCTCACAAAAATTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTA                                                                                                                               >  1:548859/1‑143                                                                                                              GACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCAGTTTTGCGTTTGTCATAAATCTCAGCCCGATGATAAATCCATCGGGCTATTTTTATTGTGCCCCGCGTTGTTGCTGGCCCCGAATGGTGGCCGCCACTCGTG                  >  2:24299/1‑143                                                                                                                  AACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCAGTTTTGCGTTTGTCATAAATCTCAGCCCGATGATAAATCCATCGGGCTATTTTTATTGTGCCCCGCGTTGTTGCAGGAACAGAATGGTGGCCGCCACGCGTGGGCG              >  2:286525/1‑143                                                                                                                              CCTGATGCGCTACGCTTATCAGGCAGTTTTGCGTTTGTCATAAATCTCAGCCCGATGATAAATCCATCGGGCTATTTTTATTGTGCCCCGCGTTGTTGCAGGAACAGAATGGTGGCCGCCACGCGTGGGCGGGCATTGAGTTT  >  2:171200/1‑143                                                                                                                                                                                                                                                                              ATCCTGCTCACAAAAATTCGCCGGATCGAACTCAACAAAATGCAGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/609993‑610141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAGTTTTGCGTTTGTCATAAATCTCAGCCCGATGATAAATCCATCGGGCTATTTTTATTGTGCCCCGCGTTGTTGCAGGAACAGAATGGTGGCCGCCACGCGTGAGCGGACATTGAGTTT  <  NC_000913/2291198‑2291080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.