New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171802	38 (0.980)	7 (0.180)	3/280	5.4	14.2%	intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
	?	NC_000913	= 4213161	47 (1.230)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT  >  NC_000913/4213025‑4213303                                                                                                                                         |                                                                                                                                               gctAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACGCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGa                                                                                                                                          <  2:63313/141‑1 (MQ=12)  aTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATAAAATTAGaa                                                                                                                                         >  1:454549/1‑143 (MQ=18)        cAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCGCATGCGAGAGTAGGGAAAGGCCAGGGATCAAAGTAGAAAAAccc                                                                                                                                   >  2:136422/1‑143 (MQ=11)          gagtgtGCCGGGCGGGAGTGGCGCGGTGGTCCTACCTGACCCCGTGCCGCACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCg                                                                                                                                 <  2:186954/138‑1 (MQ=14)              ttGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGtgc                                                                                                                             >  2:650381/1‑141 (MQ=255)                gCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTCGGGAACTGCCAGGCATCAAATTAGGCCGACCCCGGTCCAt                                                                                                                           >  1:329689/1‑143 (MQ=11)                  cTGGCGGCAGTAGCGCGGTGGTCACACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTACAAAAACCCCGGTCCATaa                                                                                                                         >  1:307967/1‑143 (MQ=255)                   tGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAGCCCGGTCCATAAg                                                                                                                        >  2:365807/1‑143 (MQ=255)                            tAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtt                                                                                                               >  2:220273/1‑143 (MQ=255)                              gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  2:238876/143‑1 (MQ=255)                              gcgcGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  2:453081/143‑1 (MQ=255)                              gcgcCGTGGTCCCACCTGACCCCCTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                             <  2:141129/143‑1 (MQ=255)                                gcgGTGGCCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGTATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttttt                                                                                                           <  2:347097/143‑1 (MQ=255)                                       tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGGGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACTCCGGTCCATAAGGCCGGGGTTTTTTGCGTATc                                                                                                    >  2:101218/1‑143 (MQ=255)                                       tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCACCAAATTAGAAAAGCCCCGGTCCATAAGGACGGGGTTGTTTGCatagc                                                                                                    >  1:283619/1‑141 (MQ=255)                                         cgaCCTGATCCCGTGCCGAATTCGGAGGTGAAGCGCCGTAGCGCCGATGGTAGTGTGGGGTCGCCCCATGCGAGTGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCaa                                                                                                  <  1:358311/141‑1 (MQ=18)                                            ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGAAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAatta                                                                                               <  2:25940/143‑1 (MQ=255)                                                aCCCCACGCCGAACTCAGAAGGGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTg                                                                                           <  2:353854/143‑1 (MQ=255)                                                  cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCa                                                                                         >  1:418374/1‑143 (MQ=255)                                                     aTGCCGAACCCAGAAGTGAAACGCCGTAGCGACGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatga                                                                                      <  2:297523/143‑1 (MQ=255)                                                          gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                 >  1:149984/1‑143 (MQ=255)                                                          gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                 <  2:351739/143‑1 (MQ=255)                                                           aaCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAgg                                                                                <  1:644703/143‑1 (MQ=255)                                                                aGAAGTGACACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAAtc                                                                           <  2:126017/143‑1 (MQ=255)                                                                   aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAAGCGAGAGTAGGGAACTGACAGGCAGCGAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                                                                        <  2:458494/143‑1 (MQ=255)                                                                       aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCACATGAGAAAACAAGTACTTAAATTTCATAAAAAAACGAAGACCTTGGTGCATAAGGCCGGGGTTTTTTGCAGAGGAATTATTTGCATGATGAAGGGAATCTCATGTc                                                                    >  2:493895/1‑143 (MQ=12)                                                                         aagCCGGAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCAGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAg                                                                  <  2:425774/141‑1 (MQ=255)                                                                            ccGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                                                               >  2:86912/1‑143 (MQ=255)                                                                               tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAGCCCCTTTCCAAAAGCCGCGGGGTGTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                            <  2:125456/143‑1 (MQ=21)                                                                                   gcCGATGGTAGTGTGGGGTCTCGCAATGCGAGAGTAGTTAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTatat                                                        >  2:497226/1‑143 (MQ=255)                                                                                             gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgt                                              >  2:583695/1‑143 (MQ=255)                                                                                                    gTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATc                                       >  2:540695/1‑143 (MQ=255)                                                                                                          ccATGCGAGAGTAGGGAACTGCCAGGCACCAAACTTATGCTGCCTCGGTCCAAAAGGCCGTGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTa                                 <  1:473687/143‑1 (MQ=255)                                                                                                            gtGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACt                               <  1:279362/142‑1 (MQ=255)                                                                                                            aTGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTCGTTGCCTACCAATTGTTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTCCt                               >  2:525739/1‑143 (MQ=39)                                                                                                                gagaGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTc                           <  1:296561/143‑1 (MQ=255)                                                                                                                  gagTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTcgc                         <  1:86912/143‑1 (MQ=255)                                                                                                                   cggaGGGAACTGCCGGGCATCAAGTGAGAAAAACCCCGTTCCATAAGGGCGGGGTTTTTTGCATATCAATTTGTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTcgcg                        <  1:394292/140‑1 (MQ=255)                                                                                                                   agTAGGGAACTGCCAGGCATCAAATTAGAAAAAACCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGCTGAAGGGAATCTCATGTCAGTTCTGTATATCCACATTCGTCGTAATCAAATTACTGTTcgcg                        >  1:234484/1‑143 (MQ=255)                                                                                                                           aCTGTCAGTCATCAATTTAGAAAATCCCCGGTCCATAAGGCCGGGTTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa                <  2:651486/143‑1 (MQ=255)                                                                                                                            ctgcgatggaTCAAATTAGAAAATCCCGGGTCCATGAGGCCGGGGTTTTTTTCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaaa               <  1:558037/134‑1 (MQ=255)                                                                                                                             tGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAg              >  2:373852/1‑143 (MQ=255)                                                                                                                               ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGGAGGGAATCTCATGTCAGTTATGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAGAGCa            >  2:546314/1‑143 (MQ=255)                                                                                                                                   gCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACg        >  1:117494/1‑143 (MQ=255)                                                                                                                                     aTCAAATTAGAAAAACCCCGGTCCATGAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCCGTATATCCAATTTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTg      <  2:567090/143‑1 (MQ=255)                                                                                                                                        aaaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCAAAACAATTATTTGCATGATGAAGGGAATCTCATGTTAGTACTGTAGATCCAAATGCGTCGTAATCAAATTAATGTTAGCTATCTTGAAAGCAAACGTGAAg   >  1:511404/1‑143 (MQ=255)                                                                                                                                         aaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATATGTCGGACGCAGAGTACTGTTCGCGATCTTGAACGCAACAGTGCAgt  >  1:473969/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                                               GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT  >  NC_000913/4213025‑4213303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.