New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	34 (0.890)	7 (0.210)	7/252	3.2	18.4%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	32 (0.940)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207674‑1207947                                                                                                                                    |                                                                                                                                               gtggaggtcgcagcACGACCAGTTAGTTCGTGCACTTTGCGCGTTGTTGTTAAGCCGCGAGAATCCGGTTGGCGATCTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                                                                                                     <  1:134415/131‑1 (MQ=255)  gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    <  2:611641/143‑1 (MQ=255)  aagcaGGGTCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    <  2:519682/139‑1 (MQ=255)   agaTGGGGCGGTACGACTAGTTACTTACCGCACTTGGCGCGCTGCTGTTATGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                   <  1:363493/143‑1 (MQ=18)          gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCTCCCGCAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTgcagcca                                                                                                                            >  1:442796/1‑141 (MQ=255)              cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGc                                                                                                                        >  2:257103/1‑143 (MQ=255)                 gagcagtaccatacCGCACTACGCGCACGGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                                     <  2:229827/132‑1 (MQ=21)                        tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCACGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTAGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                              >  1:12319/1‑143 (MQ=255)                         acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                             <  2:441204/143‑1 (MQ=255)                                           gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCCCCGGGTTCATAGcga                                                                                           >  2:220861/1‑141 (MQ=255)                                                   tAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                   <  2:182534/143‑1 (MQ=255)                                                     aggcgcgAGAATCCGTTTGGCGATATCAGATCGGGTGGCACTGTGCAATCGGCTCTCGACAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                 <  1:296525/140‑1 (MQ=37)                                                       ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATgc                                                                               >  2:321955/1‑142 (MQ=255)                                                         gCACGAAGCGGTTTGGCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGTAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCGGTTATGAtt                                                                             <  1:207880/143‑1 (MQ=37)                                                          cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTtg                                                                            >  2:141484/1‑143 (MQ=255)                                                            aGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          <  2:105195/143‑1 (MQ=255)                                                             gAATCCGGTGGGCGATATCACATCGTATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                         <  1:250661/143‑1 (MQ=255)                                                                tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCACCGGCTTCATCGCTATACCGGTTATGATTGGTGGTa                                                                      >  2:275352/1‑143 (MQ=255)                                                                    tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  <  2:657227/143‑1 (MQ=255)                                                                    gttGTCGATATCTAGTCGGATGCCATTTTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  <  1:436994/142‑1 (MQ=255)                                                                     gtGGCCATATCGAATCGGATGGCACTATGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGACCAAAACTTTTTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                 <  1:326234/142‑1 (MQ=38)                                                                         cggtgtcgaaTCGGAGGGGAGTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                             <  1:257103/135‑1 (MQ=39)                                                                            tatCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACTGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                          <  1:620746/143‑1 (MQ=255)                                                                             atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACGTTGGTTTGGGAGAAGGAGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                                         <  2:257626/143‑1 (MQ=255)                                                                             atCAAATCGGATGGCACGGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                                         <  2:442796/143‑1 (MQ=255)                                                                                      gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa                                                <  2:615225/143‑1 (MQ=255)                                                                                           cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTggg                                           >  1:67818/1‑143 (MQ=255)                                                                                                  cAAGCGGCTCTGGGAGAGCGTGGTTTGGGGGAAGGAGGAAATCTCAATGCAGCAACGGCTACATTAGGACGCAGCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                    <  1:337245/143‑1 (MQ=255)                                                                                                      cGGCTTTCGAAAATCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATGAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                <  2:512345/143‑1 (MQ=255)                                                                                                          tctcGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCAACGGTTTCATCGCTATACCGGTTATGGATGGTGGTATTGAGCAATCAGTAAGCAGTCAGCGTGGGTGGGAGGCCGCac                            >  1:145088/1‑142 (MQ=255)                                                                                                                aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATCGCCATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCAt                      >  1:186725/1‑143 (MQ=255)                                                                                                                  acgttGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt                    >  2:447310/4‑143 (MQ=255)                                                                                                                    cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTCATGAGTGGTGGTATTGAGCAATCAGTCACCCTTCAGTGGGGGGGGAATGCCGCCAAAGCAACTGc                  >  1:311278/1‑143 (MQ=255)                                                                                                                                    gAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGGTGGa  >  2:473339/1‑143 (MQ=255)                                                                                                                                    |                                                                                                                                               GGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207674‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.