New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 266236437 (0.960)4 (0.110) 3/270 5.4 11.1% noncoding (58/266 nt) REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences
?NC_000913 = 2662474 29 (0.790)noncoding (168/266 nt) REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAATTGGTCAACTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGT  >  NC_000913/2662222‑2662502
                                                                                                                                              |                                                                                                                                          
tAATTTTGTCAACTATTTACTTGATTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGAt                                                                                                                                            <  1:260866/143‑1 (MQ=255)
tAAATTGGTCAACTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGAt                                                                                                                                            <  2:210537/143‑1 (MQ=255)
      ggTCAACTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACg                                                                                                                                      <  1:251152/143‑1 (MQ=255)
       gTCACCTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCTGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATTCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGc                                                                                                                                     <  1:150425/143‑1 (MQ=255)
        tCAACTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTATACTGTACGCCTGCTAAGACGCa                                                                                                                                    >  1:501494/1‑143 (MQ=255)
         cAACTATTTACTTGACTGATTTAGTCGGGCATTTAACCCTCAGTGCCATTTTTTTATCGTGGGGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCAt                                                                                                                                   <  2:340885/143‑1 (MQ=255)
                ttACTTGGCTGATTTAGTCGGGTATTTAACCTTCAGTGCCAGTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGt                                                                                                                            <  1:70301/143‑1 (MQ=255)
                      gACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATc                                                                                                                      >  2:590490/1‑143 (MQ=255)
                         tGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTGTGCCTGCTAACACGGATTCCGCGTCgattccgt                                                                                                                   >  1:26294/1‑136 (MQ=37)
                                 tCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                           >  2:275164/1‑143 (MQ=255)
                                   gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATTGGCTCTGGGGTTCTGTACGCTGTAGGGCTGATAAGAGGGATTATGGGTAGCATCAGGGAAGGGCTGt                                                                                                         >  1:168621/1‑143 (MQ=25)
                                   gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGTCTGt                                                                                                         >  2:369844/1‑143 (MQ=255)
                                    gttatttgtgcTTCTGTGCTATTTTTGTCGCCTGGTGTTTCCACCTGTGGTCGGATGCGGCCTGAACTCCTTTTCTGCTGTGTGGTTTTTTCCTCTGTCCGTCTGCTAAGTTTCTTTACGCGTTGCATCAGGCAACGGCTGTc                                                                                                        <  1:220902/133‑1 (MQ=255)
                                     gTATTTATCCTGCAGTGCCATTTTGCGACCGGGGCGTTTGTACCGTTTCTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGcctacagtgtac                                                                                                       <  1:251301/143‑12 (MQ=16)
                                       aTTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGAGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCAGATAAGGCGCGTTACGCGTCGCACCACGCGACGGCTGCCggg                                                                                                     >  2:280555/1‑142 (MQ=255)
                                        tttAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGAt                                                                                                    <  1:418507/143‑1 (MQ=255)
                                                  aGTGCCATTTTGTTAGCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                                                                                          <  2:608994/143‑1 (MQ=255)
                                                          ttttttATCGTGGCGTTTGTGCCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAt                                                                                  <  1:415141/143‑1 (MQ=255)
                                                              ttAGCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTTGGTTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCATGAACGCCTTATCCGa                                                                              <  2:563512/143‑1 (MQ=255)
                                                               tATCGTGGCGGTGGTCCCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGAGAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc                                                                             <  2:168621/143‑1 (MQ=255)
                                                                    tGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGAGATCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg                                                                        >  2:410665/1‑143 (MQ=255)
                                                                      gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGt                                                                      >  2:343388/1‑143 (MQ=255)
                                                                       cGTCTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGtt                                                                     <  2:225349/143‑1 (MQ=255)
                                                                          ttGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCCTATCCGACCCACGGTTCtc                                                                  >  1:143507/1‑142 (MQ=255)
                                                                             tACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTc                                                               >  2:524169/1‑143 (MQ=255)
                                                                              accttgtgtCGGATGCGGCGTGAACGCCATTTCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCa                                                              <  1:590490/137‑1 (MQ=255)
                                                                                cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACt                                                            >  2:414771/1‑143 (MQ=255)
                                                                                 tgttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTg                                                           >  1:491528/1‑143 (MQ=255)
                                                                                    tgtCGGATGTGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg                                                        >  2:319590/1‑143 (MQ=255)
                                                                                      tCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGc                                                      >  2:243846/1‑143 (MQ=255)
                                                                                         gATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGCTTCTGATTAATGTAGGCCTg                                                   >  1:79026/1‑143 (MQ=255)
                                                                                               gcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa                                             <  2:75349/143‑1 (MQ=255)
                                                                                                cgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGGGAACGCCTTATCCGCCCTACGGTTCTGGTCACTGTAGGCCTGATAAGaa                                            >  2:187790/1‑142 (MQ=255)
                                                                                                      cGCCTTATCCGCCGTGTGGTTCTGTACTGTGTAGGCCTGATAAGACTCATTACGCGTCGCATCAGGCAACGGCTGTCCGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTa                                      <  2:547381/143‑1 (MQ=11)
                                                                                                      cGCCATATCCGCGCTGGGGTTCTGTACACTGGAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTa                                      <  1:327106/143‑1 (MQ=255)
                                                                                                            atCCGCCCTGTGTTTCTCTACTCTTTAGGCCTGATACGTCGCATTACGCGTCGCATCAGGCAACGGCTGTCGTATGCGGCGTTAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTc                                <  1:25997/143‑1 (MQ=11)
                                                                                                             tCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCg                               <  1:414771/143‑1 (MQ=40)
                                                                                                               cGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCGGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCa                             >  2:86/1‑143 (MQ=255)
                                                                                                                     ggggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCCTGAACGCCTTATCCGACCTACGGTTGTGTTCGGTGTCGGCCCGGTTAGACTGCTTACGCGtatccttaggg                       >  1:494838/1‑133 (MQ=11)
                                                                                                                         ttCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCCTTACGCGTCGCACCCGGCCACg                   >  2:205915/1‑143 (MQ=255)
                                                                                                                                          cTGATGAGCCGCGTTACGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt  <  1:562654/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                          
TAAATTGGTCAACTATTTACTTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGT  >  NC_000913/2662222‑2662502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.