New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	1 (0.030)	42 (1.090)	31/284	0.2	97.7%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTA  >  NC_000913/2101607‑2101884                                                                                                                                                |                                                                                                                                        tCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTCCACGGGCAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaag                                                                                                                                         <  1:74500/143‑1 (MQ=255)    tCACAGTACATAAAGCAACCATGATCGAAGCCATTTACACGAAAAAAAAAAAAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa                                                                                                                                      <  1:609833/143‑1 (MQ=255)      acaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCATATCAGAATAGATACTTTCTCTAGGAATTTTTGTTTTATTcaggaagg                                                                                                                                    >  1:612858/1‑143 (MQ=255)           aCATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCACCAACTCTACCAGATGATATACTTTCTTTAGGAATTTTTGTTTTCTTAAGGAAGGTGCGa                                                                                                                               >  2:668830/1‑143 (MQ=255)            cATAAAGTAACCTTGATCGAAGCCATTTACAAGAACAACATCTTCAAACCTCATTCACATAATTCCTCCTCGCGCATCACT‑TACAACCGTATCAGACTCCATACTTAAGTGAGGAATTTTTGTTTTATTAAGGAAGGTGCGaa                                                                                                                              >  2:673274/1‑143 (MQ=255)              tAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTCTAGGACTTTTTGCTGTCTTAGGGCAGGTGCCAATa                                                                                                                            >  2:349357/1‑143 (MQ=255)               aaaGTAAACTGGATCGCAGCCATCTCCACACACAACATCAGAAACACGCACAAGTATAATGTTTCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATaa                                                                                                                           <  1:77231/143‑1 (MQ=255)                   gaaCCTTGATCGAAGCCATTCACACGCACACAATCTGAAAAACGTACGAGCATAAATGAGCCT‑GCGCACCAATCAACAACCGTATCAGAAGAGATACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                       <  1:288492/142‑1 (MQ=255)                    aaCCTGGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCggg                                                                                                                      <  2:294473/143‑1 (MQ=255)                        ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                  <  1:257487/143‑1 (MQ=255)                        ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACCTTCTTTAGGCATTTTTGTTTTATTAAGGAGGGTGCGAATAAGCGGGGaaa                                                                                                                  >  2:198233/1‑143 (MQ=255)                           aTCGAAGCCATTTACGCGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                               <  1:407877/143‑1 (MQ=255)                            tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                              >  1:582431/1‑143 (MQ=255)                                    aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                      >  1:71849/1‑143 (MQ=255)                                    aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTCTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                      >  2:388537/1‑143 (MQ=255)                                            gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTATCGGCTGACTCact                                                                                              >  1:187540/1‑141 (MQ=255)                                                  aaTCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAAGAATTTTTGTTTTATTAAGGAAGGTGCGAATAGGCGGGGATGTTCTTCTCGGCTGACTCAGtcatttc                                                                                        >  2:600239/1‑143 (MQ=255)                                                     cTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcaattcatt                                                                                     >  1:533958/1‑143 (MQ=255)                                                             cGTACCAGCCTAAACGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                                                             <  2:182717/143‑1 (MQ=255)                                                              gTACCAGCATAAATGATACA‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                            >  1:553716/1‑143 (MQ=255)                                                                  cAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAGTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                        <  1:62147/143‑1 (MQ=255)                                                                  cAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                        <  2:290613/143‑1 (MQ=255)                                                                    gCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                      >  2:190624/1‑143 (MQ=255)                                                                         aaTGATCCT‑GCGCACGAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                                                                 >  1:569124/1‑143 (MQ=255)                                                                          aTGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTACGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGttttggcctgttt                                                                >  1:119675/1‑133 (MQ=37)                                                                                cT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                          <  2:136508/143‑1 (MQ=255)                                                                                   gcgcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                        <  2:201942/143‑1 (MQ=255)                                                                                       aCCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                    <  2:389170/143‑1 (MQ=255)                                                                                                caacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                           <  2:155361/143‑1 (MQ=255)                                                                                                 aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCACTTCACTTCTTTATTTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                          <  2:348059/143‑1 (MQ=21)                                                                                                      tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGGAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                     <  1:350156/143‑1 (MQ=255)                                                                                                          aGAATGGATACTGTCTTTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                 <  1:621640/143‑1 (MQ=255)                                                                                                           gAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTACGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATTCTCCTAtt                                >  1:524664/1‑143 (MQ=18)                                                                                                                      ttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc                     >  1:451241/1‑143 (MQ=255)                                                                                                                         tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                  <  2:571809/143‑1 (MQ=255)                                                                                                                         tttAGGAATTGTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                  <  2:397405/143‑1 (MQ=255)                                                                                                                          ttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                 <  2:617383/143‑1 (MQ=255)                                                                                                                           tAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                >  2:428146/1‑143 (MQ=255)                                                                                                                                  ttttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa         <  2:71849/143‑1 (MQ=38)                                                                                                                                     tGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTATTAGCCATTTAAgac      >  2:206226/1‑141 (MQ=255)                                                                                                                                        tttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAGTCAGACCGTTCCTTCGCCGTTTCAGGCGtt   >  1:535918/1‑143 (MQ=11)                                                                                                                                         ttattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTATACCGTTTCTTACCCATTTAAGGCGttc  >  1:196569/1‑142 (MQ=12)                                                                                                                                                |                                                                                                                                        TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCT‑GCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTA  >  NC_000913/2101607‑2101884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.