New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2662364	38 (0.990)	3 (0.080)	3/270	5.4	8.0%	noncoding (58/266 nt)	REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences
	?	NC_000913	= 2662383	33 (0.900)					noncoding (77/266 nt)	REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGG  >  NC_000913/2662244‑2662524                                                                                                                                            |                                                                                                                                              gACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATc                                                                                                                                            >  2:590490/1‑143 (MQ=255)            tCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                                                 >  2:275164/1‑143 (MQ=255)              gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATTGGCTCTGGGGTTCTGTACGCTGTAGGGCTGATAAGAGGGATTATGGGTAGCATCAGGGAAGGGCTGt                                                                                                                               >  1:168621/1‑143 (MQ=25)              gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGTCTGt                                                                                                                               >  2:369844/1‑143 (MQ=255)               gttatttgtgcTTCTGTGCTATTTTTGTCGCCTGGTGTTTCCACCTGTGGTCGGATGCGGCCTGAACTCCTTTTCTGCTGTGTGGTTTTTTCCTCTGTCCGTCTGCTAAGTTTCTTTACGCGTTGCATCAGGCAACGGCTGTc                                                                                                                              <  1:220902/133‑1 (MQ=255)                gTATTTATCCTGCAGTGCCATTTTGCGACCGGGGCGTTTGTACCGTTTCTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGcctacagtgtac                                                                                                                             <  1:251301/143‑12 (MQ=16)                  aTTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGAGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCAGATAAGGCGCGTTACGCGTCGCACCACGCGACGGCTGCCggg                                                                                                                           >  2:280555/1‑142 (MQ=255)                   tttAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGAt                                                                                                                          <  1:418507/143‑1 (MQ=255)                             aGTGCCATTTTGTTAGCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa                                                                                                                <  2:608994/143‑1 (MQ=255)                                     ttttttATCGTGGCGTTTGTGCCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAt                                                                                                        <  1:415141/143‑1 (MQ=255)                                         ttAGCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTTGGTTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCATGAACGCCTTATCCGa                                                                                                    <  2:563512/143‑1 (MQ=255)                                          tATCGTGGCGGTGGTCCCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGAGAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc                                                                                                   <  2:168621/143‑1 (MQ=255)                                               tGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGAGATCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg                                                                                              >  2:410665/1‑143 (MQ=255)                                                 gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGt                                                                                            >  2:343388/1‑143 (MQ=255)                                                  cGTCTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGtt                                                                                           <  2:225349/143‑1 (MQ=255)                                                     ttGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCCTATCCGACCCACGGTTCtc                                                                                        >  1:143507/1‑142 (MQ=255)                                                        tACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTc                                                                                     >  2:524169/1‑143 (MQ=255)                                                         accttgtgtCGGATGCGGCGTGAACGCCATTTCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCa                                                                                    <  1:590490/137‑1 (MQ=255)                                                           cTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACt                                                                                  >  2:414771/1‑143 (MQ=255)                                                            tgttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTg                                                                                 >  1:491528/1‑143 (MQ=255)                                                               tgtCGGATGTGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg                                                                              >  2:319590/1‑143 (MQ=255)                                                                 tCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGc                                                                            >  2:243846/1‑143 (MQ=255)                                                                    gATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGCTTCTGATTAATGTAGGCCTg                                                                         >  1:79026/1‑143 (MQ=255)                                                                          gcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa                                                                   <  2:75349/143‑1 (MQ=255)                                                                           cgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGGGAACGCCTTATCCGCCCTACGGTTCTGGTCACTGTAGGCCTGATAAGaa                                                                  >  2:187790/1‑142 (MQ=255)                                                                                 cGCCTTATCCGCCGTGTGGTTCTGTACTGTGTAGGCCTGATAAGACTCATTACGCGTCGCATCAGGCAACGGCTGTCCGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTa                                                            <  2:547381/143‑1 (MQ=11)                                                                                 cGCCATATCCGCGCTGGGGTTCTGTACACTGGAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTa                                                            <  1:327106/143‑1 (MQ=255)                                                                                       atCCGCCCTGTGTTTCTCTACTCTTTAGGCCTGATACGTCGCATTACGCGTCGCATCAGGCAACGGCTGTCGTATGCGGCGTTAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTc                                                      <  1:25997/143‑1 (MQ=11)                                                                                        tCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCg                                                     <  1:414771/143‑1 (MQ=40)                                                                                          cGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCGGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCa                                                   >  2:86/1‑143 (MQ=255)                                                                                                ggggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCCTGAACGCCTTATCCGACCTACGGTTGTGTTCGGTGTCGGCCCGGTTAGACTGCTTACGCGtatccttaggg                                             >  1:494838/1‑133 (MQ=11)                                                                                                    ttCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCCTTACGCGTCGCACCCGGCCACg                                         >  2:205915/1‑143 (MQ=255)                                                                                                                     cTGATGAGCCGCGTTACGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt                        <  1:562654/143‑1 (MQ=255)                                                                                                                                      gcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCCGCGTGCACGCCTTATCCGccc       >  2:614771/1‑143 (MQ=255)                                                                                                                                           gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGCATGCGGCGTGCACGCCTTATCCGACCTACgg  >  2:394824/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                              GACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGG  >  NC_000913/2662244‑2662524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.