New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2375833	1 (0.030)	31 (1.060)	21/276	0.4	97.0%	coding (128/963 nt)	menC	O‑succinylbenzoyl‑CoA synthase
	?	NC_000913	2514275 =	NA (NA)					intergenic (+33/‑54)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase

AATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2375689‑2375833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGG  >  NC_000913/2514275‑2514415                                                                                                                                                                                                                                                                                                AATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTC                                                                                                                                                 <  1:287111/143‑1              CGCCAAAGGCCACGGCAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAA                                                                                                                                    <  2:50331/143‑1                                   TCTGCGTTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACG                                                                                                               <  2:310091/143‑1                                        GGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTAACCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGATTCCTGACTGAAGCCCGGCAGTGGAGGGATCTCCAATAAGCGCTAACTAAAGCGTAGTGGTACGACGCCCGA                                                                                                          >  1:322556/1‑143                                        GGTAGCTCGCAATCGCCTGCCAGCCAGTAATTTACCCAGGCAAGCAGCACCCTTTGCGCCTCTTCCCAGGTTTCCTGACTGAACCCCGGCAGTGAGGAGATCTCCCATAAGCCCTCAATAAAGGGGGGTGGTATTgcccccga                                                                                                          >  1:175242/1‑135                                              tctCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCGTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAT                                                                                                    <  2:321311/140‑1                                                GCAAGCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT                                                                                                  <  1:223708/143‑1                                                   gcCGCCGGCCAGCCAGTTCTCCACCCAGGCAAGCAGCACGCTTTGCGCGTCTTCCCAGGTGTCCTGACCGCAGCCCGGCAGTGGGGAGGTCTCCCATATGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAC                                                                                               <  2:6955/141‑1                                                        CTGCCTGCCAGTTCTTTACCCATGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGCCTGAAGCCCTGCAGTGTGGAGTTCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC                                                                                          <  1:437761/143‑1                                                          GCCCGCCGGTTATTTGCCTGGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCAAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA                                                                                        <  1:380131/143‑1                                                          GCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTGGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA                                                                                        <  1:477199/143‑1                                                             gccgcgttgctgcCCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGCAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA                                                                                     <  2:293568/130‑1                                                               CCAGTTATTTACCCAGGCAAGCAGCACATTTTGCGCTTCTTCCCAGGTTTCCTGATTTAAGCCCGGCAGTTGGGAGTTCTCCCATAACCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAAT                                                                                   <  2:77337/143‑1                                                               CCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGCGATCTCCCATAAGCGCTACCTTAAGGGTTGTGGTAGTACGCCTGATAGGATTTAACagcgcgcttaag                                                                                   >  1:174220/1‑131                                                                       tgcCCCGGGCAAGCAGCCCACTCTGCGCCGCTTCCCAGGTCTCCTGCCTGAAGCCCGGCAGTGGGGAGATCCCCCATAAGCGCTATCGTAACGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA                                                                           <  2:90760/140‑1                                                                       TTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA                                                                           <  2:285769/143‑1                                                                           CCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTACCGTGCCCATGAATTcaccccacgcc                                                                       >  1:377406/1‑132                                                                                 AAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCCGCAGTGTTGTCGACGCCCATAGGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGG                                                                 <  2:239564/143‑1                                                                                  AGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCAGAAGCGCTAACTTGAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGT                                                                <  1:454832/143‑1                                                                                        acgccTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAA                                                          <  1:390713/138‑1                                                                                          ACTGTGCTCCTCTTCCCAGGTTTCCTGACTGAACCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAGTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT                                                        <  1:412434/143‑1                                                                                              TGCGCCTCTTCCCCGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTATCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                                                    <  1:219556/143‑1                                                                                              TGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                                                    <  2:298182/143‑1                                                                                               GCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGAGGGGAGATCTCCCATAAGCGCTAACTTAAGGGATGTGGTATTCCGCCTGATATGATTTAACGTGCCGATGAATTACTCACACGATAACGAGTCAGCCATTCTCGC                                                   >  1:149519/1‑143                                                                                               GCGCCTCTGCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                                   <  2:483993/143‑1                                                                                                       TCCCAGGTTTCCGGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTG                                           <  2:269989/143‑1                                                                                                                TCCGGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCG                                  <  1:289503/143‑1                                                                                                                         AAGCCCGGCAGTGGGGAGATCCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG                         <  2:75876/143‑1                                                                                                                         AAGACCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG                         <  1:276785/143‑1                                                                                                                                 CAGTGGGGAGATGTCCCATAAGCGCTAACTTAAGGGTGGTGGCATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCG                 <  2:416197/143‑1                                                                                                                                      GGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGGACTGGAGACATAGGCACG            >  2:459972/1‑143                                                                                                                                           ATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAAATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATG       >  2:391341/1‑143                                                                                                                                              TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACATGCCGATGAATTACTCTCACGATAACTGGTCAGCAACTCTCGCCCACATTGGTAAGCACGAAGAACTGGATACTTCGGCACGTAATGCCG    >  1:484314/1‑143                                                                                                                                              TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGGTAACTGGTCAGCAATTCTGGCACATATTGGTCAGCCCGGAGAACTGGAGACTTCGGCAGCTAATGCag    >  1:127012/1‑141                                                                                                                                              TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG    >  1:429707/1‑143                                                                                                                                                CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCCGCCCGTAATGCCGGG  >  2:277633/1‑143                                                                                                                                                                                                                                                                                                AATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2375689‑2375833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGG  >  NC_000913/2514275‑2514415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.