| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258674 | NA (NA) | 21 (1.000) | 20/282 | 0.1 | 100% | intergenic (+775/‑2) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1303173 = | 0 (0.000) | coding (275/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
ATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC > NC_000913/1303043‑1303288 | cggcggtgcttttgccgttccgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCCGTTTTCCCGt < 2:312141‑M2/13‑1 (MQ=255) ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggcgcacttcaaaaccaccatcataaactaaatcagtaagttgacagcatcacCCAGTATTCACGTTTCTGCCAAAc > 1:283983‑M2/120‑143 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagtgacagctgatagaattagtagccattggagcacctcaaaatcaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTgg < 1:383337‑M2/27‑1 (MQ=255) ccgttacgcacaaccccgtcagtagccgaacaggatggacagctgatagaaacagaatccactggagcacctcaaaaacaccatcatacgctaaagcggtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTgg < 1:99583‑M2/27‑1 (MQ=255) cgttacgcaccaccccgtctgttgctgaacaaaagagtagagtagaaaaaacaaaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTggg < 1:380938‑M2/28‑1 (MQ=255) accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacagcatcatacactaaatcagtaagttggcagcatcacCCACTTTTCCCGTTTCTGACAAACTGggcgccgccg > 2:242672‑M2/108‑141 (MQ=255) gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaacaacaccatcatacactaaatcagtaagttggcagcataacCCAATATTCCCGTTTCTGCCAAACTGTGAGCCGCAGCATTTTTc > 1:63203‑M2/100‑143 (MQ=255) gctgaagagggggtacagcggatagaaacacaagccactggagcacctcaaaaacaccttcatacactcaatcagtaagtttgcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCgg < 2:69214‑M2/51‑1 (MQ=255) ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcacCCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGt > 1:214549‑M2/92‑143 (MQ=255) tgaacaggagggacagttgatagaaacagaagccattgtagcacctcaaaaatatcatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTa < 1:240593‑M2/53‑1 (MQ=255) agcgacagctgatagaaacagaagccactggagcacgtcaaaaacaccatcatacactaaagcagtaagttggcagcatcagTCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTggg < 2:269419‑M2/61‑1 (MQ=255) gggacagctgatagaaacagaagccactggagcacctcacaaacaccatcatacaccaaatcagtaagttggcagcatcacCCAGTTTTACAAAATCAACAAAACAGGAAGCCGAAGCATTTTTCCTTGCGGTAATACTGGgt > 1:46193‑M2/82‑143 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCATTGCGGTAATACTGGGTGtt > 1:123380‑M2/79‑143 (MQ=255) agaatcagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGc < 1:315061‑M2/74‑1 (MQ=255) gtccgccacaaaaacaccatcataaacttaatcagtaagttggcatcttcttTTAGTTTTCCTTTTTCTGTCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaa < 1:149497‑M2/91‑1 (MQ=255) ctcaacaccaccgtcagacactaaatcagtaagttggcagcagcacCCAGTTTTCCCGTTTCTGCCAAACGGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa < 2:5787‑M2/97‑1 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGAAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCCTCAAAACAAGACACCaaa > 2:63475‑M2/40‑143 (MQ=255) ccatcatatactaattcagtaagttggcagcatcacCTAGTTTTCCCGTTTCTGCGAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATgg < 2:270457‑M2/107‑1 (MQ=255) tacactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGAGGAAATAATGGGTGTTAGAGCTGGCGTTATTGCCGCATTAAAACAAAACACAAAAAGGGACtat > 1:178811‑M2/31‑143 (MQ=255) acactaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGAGCTGGCGTTCTTGCTACTTTAAAACCAAACACCAAATGGGACcata > 2:284547‑M2/30‑143 (MQ=255) actaaatcagtaagttggcagcatcacCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACCAAACCCCAAGTGGGACTATAcc > 2:4069‑M2/28‑143 (MQ=255) | ATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACC > NC_000913/1303043‑1303288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |