| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,368 | Δ5 bp | coding (227‑231/690 nt) | phoB → | response regulator in two‑component regulatory system with PhoR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417368 | 417372 | 5 | 17 [0] | [0] 16 | phoB | response regulator in two‑component regulatory system with PhoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417367 | 0 (0.000) | 16 (0.760) | 14/284 | 0.4 | 100% | coding (226/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417373 = | 0 (0.000) | coding (232/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||
GCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATT > NC_000913/417235‑417510 | ttgaagcggaagattatgatagtgctgtgaatctaatgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcataaaacacctcaagcgcgagtcgatgacccgggCCAgt < 1:386612‑M2/5‑1 (MQ=255)tcgaagcggaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgattgtatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAgt < 1:206034‑M2/5‑1 (MQ=255) gtctgttgttgtcggtgctgtgaattaactgaatgaaccctgggcggatttaattctcctcgacggggtgttacctggcggttccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATg < 2:219735‑M2/12‑1 (MQ=255) gattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagacgatgacccgggCCAGGGGTGAGGTTGa > 2:371775‑M2/128‑143 (MQ=255) ctacgacagtgctgtgaatcaactgaaggaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgtcccgggCCAGTGGTGATGTTGAcc < 2:336116‑M2/18‑1 (MQ=255) gacagtgctgtgattcaactaaatgatccctggtctgttttaattttcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCa < 1:246827‑M2/22‑1 (MQ=255) agtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcttttttatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCagag < 1:20733‑M2/25‑1 (MQ=255) ctgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaatcacctccaccgccagccgatgaccccggCCCGTGGCGATGTTGACCGCAAGAGCGAAAGAAGAGGATc > 1:69735‑M2/104‑143 (MQ=255) ccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacatcaagcgcgaggcgaggaccagggCCCGCGGAGACGGTGACCGTCAGAGGGGAAGAAGAAGATCGCGTGcgcg < 1:259345‑M2/49‑1 (MQ=255) atttaattctcctcgactggatgttacctggcggctccggtatccagttcatgaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAAc < 1:386291‑M2/59‑1 (MQ=255) attgttcctcggctgtgtgttaccgggcgtctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAACAAGAAGATCGCGTGCGCGGCCTTGAAACCGgc < 2:45408‑M2/63‑1 (MQ=255) gttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGCGGGTAAGAAGAAGATCGAGTGCGCGAAATTAAAAAAGGAGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCtg > 1:89925‑M2/39‑143 (MQ=255) ttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCtgg > 2:296856‑M2/38‑143 (MQ=255) cgacccgagtcgagggcccggcTCGTTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTTAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAg < 2:148441‑M2/121‑1 (MQ=255) atgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTTTATCACCAAGACGAATTCGACAAAGGAGAAGGTGGCGAGAAACAAAGAGGtaatgaacc > 1:132105‑M2/11‑139 (MQ=255) ccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGGAGGAGCTGGTGGCGCGAATCAAAGCGGTAATACGCCGAAtt > 1:99026‑M2/6‑143 (MQ=255) | GCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATT > NC_000913/417235‑417510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |